View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_70 (Length: 248)
Name: NF20076_low_70
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_70 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 26755952 - 26755715
Alignment:
| Q |
11 |
agcacagattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
110 |
Q |
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| T |
26755952 |
agcacaaattgtttctcctatgagtttcacattttgatgttgacattactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagc |
26755853 |
T |
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| Q |
111 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctggt |
210 |
Q |
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| T |
26755852 |
aagtttagtgacagcttttctgagtgaaaaatcaagcatccattcctctgcattttttctatcatccatcatctgatgcttcagttcaaccttctctggt |
26755753 |
T |
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| Q |
211 |
tctcgatcagaaaccaagggcaggaaatttggctttct |
248 |
Q |
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| T |
26755752 |
tctcgatcagaaaccaagggcaggaaatttggctttct |
26755715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 6039275 - 6039423
Alignment:
| Q |
55 |
attactgtttcaaaagcttcaacaagcaatgcaaccttctttttcctggctggagcaagtttagtgacagcttttctgagtgaaaaatcaagcatccatt |
154 |
Q |
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| T |
6039275 |
attacagtttcaaaggcttcaactagcaatgccactttcttctttctagcaggagcaagcttgttcacagcttgccttagtgcacaatcaaccatccaat |
6039374 |
T |
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| Q |
155 |
cctctgcattttttctatcatccatcatctgatgcttcagttcaacctt |
203 |
Q |
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| T |
6039375 |
cctctgcattctttctttcatccatcatttgatgcctcaaatcaacctt |
6039423 |
T |
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