View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_low_73 (Length: 241)

Name: NF20076_low_73
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_low_73
NF20076_low_73
[»] chr2 (26 HSPs)
chr2 (12-241)||(21624303-21624527)
chr2 (165-241)||(2438666-2438742)
chr2 (165-241)||(18840960-18841036)
chr2 (165-241)||(38117106-38117182)
chr2 (165-241)||(15972909-15972985)
chr2 (166-240)||(5040771-5040845)
chr2 (171-240)||(12224260-12224329)
chr2 (165-241)||(28596505-28596581)
chr2 (165-240)||(37559014-37559089)
chr2 (165-229)||(24009343-24009407)
chr2 (165-229)||(35056927-35056991)
chr2 (165-229)||(37419802-37419866)
chr2 (165-228)||(26769571-26769634)
chr2 (165-208)||(34006937-34006980)
chr2 (165-223)||(42511329-42511387)
chr2 (165-241)||(6940291-6940367)
chr2 (170-241)||(14996171-14996246)
chr2 (165-229)||(30717466-30717530)
chr2 (165-236)||(19580232-19580303)
chr2 (169-241)||(27460073-27460142)
chr2 (165-223)||(36756280-36756338)
chr2 (196-241)||(30404828-30404873)
chr2 (177-241)||(5367228-5367292)
chr2 (197-241)||(20242706-20242750)
chr2 (165-241)||(21091759-21091835)
chr2 (165-229)||(44860379-44860443)
[»] scaffold0652 (1 HSPs)
scaffold0652 (165-241)||(409-485)
[»] chr6 (36 HSPs)
chr6 (165-241)||(34595170-34595246)
chr6 (165-241)||(32978846-32978922)
chr6 (165-241)||(28152134-28152210)
chr6 (165-241)||(7977777-7977853)
chr6 (165-238)||(4877982-4878054)
chr6 (165-229)||(9107306-9107370)
chr6 (165-229)||(16766756-16766820)
chr6 (165-241)||(17841536-17841612)
chr6 (165-241)||(28715331-28715407)
chr6 (165-241)||(8776915-8776996)
chr6 (165-241)||(6898228-6898304)
chr6 (165-241)||(7265540-7265616)
chr6 (165-228)||(8389415-8389478)
chr6 (166-214)||(17302631-17302679)
chr6 (170-237)||(853811-853878)
chr6 (170-241)||(16833344-16833415)
chr6 (165-223)||(12696383-12696441)
chr6 (165-211)||(31384996-31385042)
chr6 (165-207)||(31959220-31959262)
chr6 (165-241)||(9658915-9658992)
chr6 (171-240)||(33001242-33001311)
chr6 (165-229)||(7248417-7248481)
chr6 (165-229)||(8365455-8365519)
chr6 (165-229)||(10339061-10339125)
chr6 (166-229)||(26247479-26247542)
chr6 (165-241)||(32511613-32511689)
chr6 (165-208)||(7625185-7625228)
chr6 (178-229)||(9522950-9523001)
chr6 (170-240)||(1315969-1316039)
chr6 (167-213)||(2545509-2545555)
chr6 (167-229)||(10827493-10827555)
chr6 (165-223)||(17327597-17327655)
chr6 (175-241)||(1191660-1191723)
chr6 (165-229)||(18367895-18367959)
chr6 (197-241)||(23771614-23771658)
chr6 (165-201)||(34446647-34446683)
[»] chr5 (22 HSPs)
chr5 (165-241)||(21191003-21191079)
chr5 (165-241)||(21576692-21576768)
chr5 (163-229)||(21522809-21522875)
chr5 (163-229)||(21533375-21533441)
chr5 (163-229)||(21542089-21542155)
chr5 (165-241)||(30098985-30099061)
chr5 (169-241)||(42893396-42893468)
chr5 (165-241)||(43564917-43564993)
chr5 (165-222)||(14873577-14873634)
chr5 (166-210)||(17088358-17088402)
chr5 (165-241)||(30502335-30502411)
chr5 (165-241)||(30542678-30542754)
chr5 (165-229)||(39268545-39268609)
chr5 (165-229)||(39698600-39698664)
chr5 (170-229)||(15382533-15382592)
chr5 (166-240)||(31084360-31084439)
chr5 (171-241)||(26312805-26312875)
chr5 (165-223)||(30098391-30098449)
chr5 (170-240)||(32630687-32630757)
chr5 (165-206)||(38464320-38464361)
chr5 (165-229)||(6401557-6401621)
chr5 (165-229)||(18592132-18592196)
[»] chr4 (41 HSPs)
chr4 (165-238)||(23292933-23293006)
chr4 (181-241)||(38846975-38847035)
chr4 (170-241)||(21945539-21945610)
chr4 (165-229)||(30982814-30982878)
chr4 (181-241)||(34306767-34306827)
chr4 (165-241)||(35161072-35161148)
chr4 (169-241)||(49431062-49431134)
chr4 (165-223)||(3947708-3947766)
chr4 (165-241)||(2361922-2361998)
chr4 (165-237)||(4157189-4157261)
chr4 (165-229)||(4672032-4672096)
chr4 (165-229)||(5414108-5414172)
chr4 (165-241)||(12895221-12895297)
chr4 (169-241)||(28964199-28964271)
chr4 (165-241)||(35157932-35158008)
chr4 (166-224)||(848015-848073)
chr4 (165-211)||(20743213-20743259)
chr4 (165-229)||(53381537-53381602)
chr4 (165-241)||(8423665-8423741)
chr4 (173-229)||(15724498-15724554)
chr4 (169-241)||(16073430-16073502)
chr4 (165-229)||(19482727-19482791)
chr4 (189-241)||(29205480-29205532)
chr4 (165-241)||(42640565-42640636)
chr4 (165-241)||(715552-715630)
chr4 (165-241)||(752878-752956)
chr4 (170-237)||(4157476-4157543)
chr4 (165-219)||(18966567-18966621)
chr4 (165-211)||(28084590-28084636)
chr4 (181-226)||(9996891-9996936)
chr4 (165-206)||(11931362-11931403)
chr4 (165-230)||(12323967-12324032)
chr4 (165-206)||(17876237-17876278)
chr4 (162-211)||(21873306-21873355)
chr4 (162-211)||(21929167-21929216)
chr4 (175-228)||(40481690-40481743)
chr4 (169-213)||(7424722-7424765)
chr4 (165-241)||(12797285-12797361)
chr4 (165-229)||(22234826-22234890)
chr4 (165-201)||(40784029-40784065)
chr4 (201-241)||(54580006-54580046)
[»] chr3 (28 HSPs)
chr3 (165-241)||(55401111-55401187)
chr3 (171-241)||(7171537-7171607)
chr3 (163-241)||(15999955-16000039)
chr3 (165-241)||(20503501-20503577)
chr3 (166-241)||(18426985-18427060)
chr3 (169-241)||(28918037-28918111)
chr3 (173-241)||(10954988-10955056)
chr3 (165-229)||(15796230-15796294)
chr3 (169-241)||(40993286-40993358)
chr3 (167-229)||(4987229-4987291)
chr3 (165-241)||(27505282-27505363)
chr3 (165-229)||(11252024-11252088)
chr3 (165-229)||(14209172-14209236)
chr3 (165-241)||(51206300-51206376)
chr3 (165-241)||(25775545-25775619)
chr3 (165-241)||(13845472-13845548)
chr3 (165-229)||(41961586-41961650)
chr3 (165-229)||(55213021-55213085)
chr3 (171-229)||(8039265-8039324)
chr3 (165-223)||(14216957-14217015)
chr3 (165-223)||(14223086-14223144)
chr3 (165-207)||(34185059-34185101)
chr3 (165-229)||(12704598-12704663)
chr3 (165-229)||(25074842-25074907)
chr3 (165-206)||(37077441-37077482)
chr3 (165-241)||(3631720-3631796)
chr3 (197-241)||(25093538-25093582)
chr3 (165-209)||(40052380-40052424)
[»] chr1 (31 HSPs)
chr1 (171-241)||(18190061-18190131)
chr1 (165-241)||(18337365-18337441)
chr1 (165-241)||(22515834-22515910)
chr1 (165-241)||(37598867-37598943)
chr1 (165-241)||(42359396-42359472)
chr1 (165-241)||(46348330-46348406)
chr1 (173-241)||(51410061-51410129)
chr1 (170-229)||(19562567-19562626)
chr1 (169-241)||(40258884-40258956)
chr1 (166-241)||(1815293-1815368)
chr1 (172-241)||(40181907-40181976)
chr1 (165-229)||(31694646-31694710)
chr1 (165-229)||(32461400-32461464)
chr1 (165-229)||(40917808-40917872)
chr1 (165-223)||(1486651-1486709)
chr1 (170-211)||(15323234-15323275)
chr1 (165-241)||(5898213-5898289)
chr1 (165-229)||(9828103-9828167)
chr1 (167-211)||(18471361-18471405)
chr1 (165-229)||(25934675-25934739)
chr1 (165-229)||(47989556-47989620)
chr1 (169-239)||(1704946-1705013)
chr1 (169-228)||(2896072-2896131)
chr1 (173-240)||(38078616-38078683)
chr1 (165-208)||(46940755-46940798)
chr1 (165-207)||(29144327-29144369)
chr1 (180-229)||(43492456-43492505)
chr1 (165-229)||(5944342-5944406)
chr1 (165-221)||(6427531-6427587)
chr1 (165-241)||(10577682-10577758)
chr1 (169-241)||(39130718-39130790)
[»] chr7 (23 HSPs)
chr7 (165-223)||(9778559-9778617)
chr7 (165-241)||(13770727-13770808)
chr7 (165-241)||(21880188-21880264)
chr7 (165-241)||(15680845-15680921)
chr7 (165-241)||(21864844-21864920)
chr7 (165-229)||(32287410-32287474)
chr7 (165-240)||(598245-598320)
chr7 (165-223)||(5409778-5409836)
chr7 (194-240)||(7197273-7197319)
chr7 (171-241)||(24105714-24105784)
chr7 (165-229)||(24339701-24339765)
chr7 (166-237)||(33994252-33994323)
chr7 (165-241)||(43027411-43027492)
chr7 (165-241)||(20549827-20549903)
chr7 (165-241)||(40287309-40287380)
chr7 (178-241)||(8234182-8234245)
chr7 (165-228)||(11665376-11665439)
chr7 (166-229)||(26033398-26033461)
chr7 (165-211)||(17852066-17852112)
chr7 (165-202)||(8842286-8842323)
chr7 (169-241)||(12278871-12278943)
chr7 (180-229)||(21930687-21930736)
chr7 (169-214)||(22868110-22868155)
[»] chr8 (31 HSPs)
chr8 (165-230)||(29510240-29510305)
chr8 (165-241)||(5813628-5813704)
chr8 (166-241)||(40332227-40332302)
chr8 (165-238)||(4498342-4498415)
chr8 (169-241)||(15023208-15023280)
chr8 (165-241)||(36450701-36450777)
chr8 (165-241)||(926735-926811)
chr8 (165-229)||(3951483-3951547)
chr8 (169-241)||(20679346-20679418)
chr8 (165-229)||(22652035-22652099)
chr8 (169-241)||(31557032-31557104)
chr8 (165-229)||(34450968-34451032)
chr8 (166-229)||(24205756-24205819)
chr8 (169-207)||(8798804-8798842)
chr8 (165-222)||(6065593-6065650)
chr8 (165-241)||(33405331-33405407)
chr8 (165-241)||(43737758-43737834)
chr8 (165-204)||(4673361-4673400)
chr8 (165-228)||(29447046-29447109)
chr8 (166-240)||(126295-126369)
chr8 (195-241)||(20873105-20873151)
chr8 (165-211)||(22197678-22197724)
chr8 (165-207)||(40064032-40064074)
chr8 (177-206)||(14513127-14513156)
chr8 (170-211)||(22943301-22943342)
chr8 (165-238)||(26434219-26434292)
chr8 (165-241)||(3025587-3025663)
chr8 (165-229)||(11803318-11803382)
chr8 (165-229)||(15816065-15816129)
chr8 (165-241)||(18407755-18407831)
chr8 (165-201)||(34127179-34127215)
[»] scaffold0053 (1 HSPs)
scaffold0053 (165-241)||(8834-8910)
[»] scaffold0019 (1 HSPs)
scaffold0019 (165-229)||(71784-71848)
[»] scaffold0306 (1 HSPs)
scaffold0306 (165-229)||(13454-13518)
[»] scaffold0152 (1 HSPs)
scaffold0152 (165-229)||(21809-21873)
[»] scaffold0086 (1 HSPs)
scaffold0086 (165-229)||(2987-3051)
[»] scaffold0083 (1 HSPs)
scaffold0083 (165-241)||(45477-45553)
[»] scaffold0050 (1 HSPs)
scaffold0050 (165-241)||(70314-70390)
[»] scaffold0003 (1 HSPs)
scaffold0003 (165-229)||(241653-241717)
[»] scaffold0512 (1 HSPs)
scaffold0512 (165-240)||(4983-5058)
[»] scaffold0361 (1 HSPs)
scaffold0361 (165-241)||(14566-14639)
[»] scaffold0044 (1 HSPs)
scaffold0044 (164-229)||(53239-53304)
[»] scaffold0475 (1 HSPs)
scaffold0475 (165-241)||(3344-3420)
[»] scaffold0009 (2 HSPs)
scaffold0009 (175-239)||(174510-174574)
scaffold0009 (175-239)||(180023-180087)
[»] scaffold0793 (1 HSPs)
scaffold0793 (165-241)||(4828-4906)
[»] scaffold0380 (1 HSPs)
scaffold0380 (165-240)||(8638-8713)
[»] scaffold0154 (1 HSPs)
scaffold0154 (167-229)||(13472-13534)
[»] scaffold0022 (1 HSPs)
scaffold0022 (171-241)||(90879-90949)
[»] scaffold0246 (1 HSPs)
scaffold0246 (175-228)||(19629-19682)
[»] scaffold0450 (1 HSPs)
scaffold0450 (165-229)||(8571-8635)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 21624527 - 21624303
Alignment:
Q  12 gcaaagggagcaatatatggctaaacttatgaagtttgcttattttatgattctcttcctttctctgtatcttgttgcaagtaagccatttccccttaca 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21624527 gcaaagggagcaatatatggctaaacttatgaagtttgtttattttatgattctcttcctttctctgtatcttgttgcaagtaagccatttccccttaca 21624428  T
Q  112 agcactgactataagccgtcttttaaagtctcatctttacttattatctatatgcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||     
T  21624427 agcactgactataagccgtcttttaaagtctcatctttacttattacctatatgcacggacactccttggattaggtgtgtcccgctgtcggacacgtg- 21624329  T
Q  212 tgtatccgacaccgacacttgtaattacac 241  Q
        ||||||||||||||||||||||||||    
T  21624328 ----tccgacaccgacacttgtaattacac 21624303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 2438666 - 2438742
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||||||||    
T  2438666 gcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacac 2438742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 18840960 - 18841036
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||| || || |||||||||||||||||||||||    
T  18840960 gcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacac 18841036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 38117106 - 38117182
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  38117106 gcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccaacacttgtaattacac 38117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 15972985 - 15972909
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||| || | ||||||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||    
T  15972985 gcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 15972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 5040845 - 5040771
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||||||||| |||| |||| |||| ||||||||| ||| || |||||||||||||||||||||||||    
T  5040845 cacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattaca 5040771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 12224329 - 12224260
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||||||||| |||| || ||||||||||||| | || |||||||||||||||||||||||||    
T  12224329 acactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattaca 12224260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 28596581 - 28596505
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| |  ||||||||||||||| || |||||||||||||||| |||||||||    
T  28596581 gcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacac 28596505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 37559089 - 37559014
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    |||||||||||||| |||||| | |||| ||||||||||||||||||    |||||||||||||||||||||||||    
T  37559089 gcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattaca 37559014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 24009407 - 24009343
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| ||| |||| || ||||| ||||||||| || ||||||||||||||    
T  24009407 gcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 24009343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 35056991 - 35056927
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||  ||||||| ||||| | ||||||||||||||| || ||||||||||||||    
T  35056991 gcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacac 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 37419866 - 37419802
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||| |||| |||||||||||||||  | || ||||||||||||||    
T  37419866 gcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacac 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 26769634 - 26769571
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||| || ||||| |||||||    
T  26769634 gcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgaca 26769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 34006937 - 34006980
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacg 208  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  34006937 gcacggacactccttgaattaggtgtgttccggtgtcagacacg 34006980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 42511329 - 42511387
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||||||||||||| |||||||  |||| || |||||||||||||||||| ||||||||    
T  42511329 gcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacac 42511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 6940367 - 6940291
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||| || || ||||||||||||   ||||| |||||||||| || || || ||||||||||||||||||||    
T  6940367 gcacggacaatcatttgattaggtgtgtcttggtgttggacacgtgtcgtgtcggataccgacacttgtaattacac 6940291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 14996171 - 14996246
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatcc-----gacaccgacacttgtaattacac 241  Q
    ||||||||| |||||||| ||||||||||||| |||||||| ||| |||     |||||||||||||||||||||||    
T  14996171 gacactcctcggattaggcgtgttccggtgtcagacacgtg-tgtgtccgacaagacaccgacacttgtaattacac 14996246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 30717466 - 30717530
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||||||| || | || |||||| |||||||| || ||||||| ||||||    
T  30717466 gcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacac 30717530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 19580232 - 19580303
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaat 236  Q
    |||| ||||||| | ||||||| ||||||  ||||| ||||||||||||| ||||||||||| |||| ||||    
T  19580232 gcacagacactcttcggattagatgtgttttggtgttggacacgtgttgtgtccgacaccgatacttataat 19580303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 27460142 - 27460073
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||  |||| ||||||| ||| |||   ||| |||||||||||| |||||||||||||    
T  27460142 ggacactccttggattagacgtgtcccggtgttggatacg---tgtgtccgacaccgacccttgtaattacac 27460073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 36756280 - 36756338
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||| ||||||||| |||||||| ||||| |||||||||||| ||||||| | ||||||    
T  36756280 gcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacac 36756338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 30404828 - 30404873
Alignment:
Q  196 ggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| |||| || |||||| |||||||||||||||||||    
T  30404828 ggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacac 30404873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 5367292 - 5367228
Alignment:
Q  177 cttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| |||| |||| |||||| | |||| || |||||||||||||| | |||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacac 5367228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 20242706 - 20242750
Alignment:
Q  197 gtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||||||||| |||||||||||||| | |||||||||    
T  20242706 gtgtcagacacgtgttgtgtccgacaccgacacatataattacac 20242750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 21091835 - 21091759
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||| | ||| ||||||||| |||||||| |||| |||   | || ||||| |||||||||||||||||    
T  21091835 gcacggacactcttcggaataggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacac 21091759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 44860443 - 44860379
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| | ||||||||||| ||| |||||||||| ||| || ||| ||||| ||||    
T  44860443 gcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacac 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 409 - 485
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||    
T  409 gcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacac 485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 34595246 - 34595170
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||||    
T  34595246 gcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacac 34595170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 32978846 - 32978922
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||||||  |||| ||||||||||||| |||| || ||||||||||||||||||||||||||    
T  32978846 gcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacac 32978922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 28152210 - 28152134
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||||| ||||||||  ||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  28152210 gcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 28152134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 7977777 - 7977853
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||||||||| ||||||| ||||| || |||||||||  |||||| ||||||||||||||||||||||||||    
T  7977777 gcacgaacactccttagattaggcgtgtttcgttgtcggacatatgttgtgtccgacaccgacacttgtaattacac 7977853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 4878054 - 4877982
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatta 238  Q
    |||||||||||||| |||||||| |||| || |||||||||| |||| || |||||||||||||||||||||||    
T  4878054 gcacggacactcctcggattaggcgtgt-cctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 4877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 9107306 - 9107370
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||  ||||| ||||||||||||||    
T  9107306 gcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacac 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 16766820 - 16766756
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||| || | |||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  16766820 gcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacac 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 17841536 - 17841612
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| ||||  | ||||||||||| ||| || |||||||||| |||||||||||||||    
T  17841536 gcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacaccgtcacttgtaattacac 17841612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 28715407 - 28715331
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||||| || | |||||| |||| ||||||||| |||||||| || ||||||||||||||||||||||||||    
T  28715407 gcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacac 28715331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 8776915 - 8776996
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatc-----cgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||| || ||     ||||||| ||||||||||||||||    
T  8776915 gcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcgtgtccgacaccaacacttgtaattacac 8776996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 6898228 - 6898304
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||| | |||||||| ||||| |||||| |||||||  | || ||||||||||||||||||||||||||    
T  6898228 gcacgaacactcatcggattaggcgtgtttcggtgttggacacgcttcgtgtccgacaccgacacttgtaattacac 6898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 7265540 - 7265616
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| ||||| ||||||||  | ||||||||||||||| || |||| |||||||||||||| | |||||||||    
T  7265540 gcacggacgctcctcggattaggcatattccggtgtcggacatgtattgtgtccgacaccgacacatataattacac 7265616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 8389415 - 8389478
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggaca-cgtgttgtatccgacaccgaca 228  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||  |||||||||||||    
T  8389415 gcacggacactcctcggattaggtgtgtcccggtgtcggacaccgtgttg-gtccgacaccgaca 8389478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 17302679 - 17302631
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgt 214  Q
    |||||||| || ||||||||||||||||||| |||||||||||||||||    
T  17302679 cacggacattctttggattaggtgtgttccgatgtcggacacgtgttgt 17302631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 853811 - 853878
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatt 237  Q
    ||||||| |||||||||| ||||  |  |||||||||| ||| |||||||||||||||||||||||||    
T  853811 gacactcattggattaggcgtgtctctatgtcggacacatgtcgtatccgacaccgacacttgtaatt 853878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 16833415 - 16833344
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||| ||||| ||||||| | |||||||||| ||||| || ||  ||||||||||||||||||||||    
T  16833415 gacactcctcggattcggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacac 16833344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 12696441 - 12696383
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||| |||||||||||||| |||||||| |||||||| ||||||||| || ||||||||    
T  12696441 gcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 31385042 - 31384996
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  31385042 gcacggacactccttggattaggcgtgtcccggtgtaggacacgtgt 31384996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 31959262 - 31959220
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacac 207  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  31959262 gcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 9658992 - 9658915
Alignment:
Q  165 gcacggacactccttgga-ttaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||| || ||  |||||||||  | |||||||||    
T  9658992 gcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacac 9658915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 33001242 - 33001311
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    |||||| |||||||||| || || ||||||| ||||||||| || |||||||||||||| | ||||||||    
T  33001242 acactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacacatataattaca 33001311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 7248481 - 7248417
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| ||||| |  |||| |||||||||||||| |||||| ||| ||||||||||    
T  7248481 gcacggacactcctcggatttgacgtgtcccggtgtcggacacatgttgtgtccaacaccgacac 7248417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 8365455 - 8365519
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||| |||||| |||||||| |||| || ||||||||||||||| || ||||| ||||||||    
T  8365455 gcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 8365519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 10339061 - 10339125
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||  ||||||| |||| || |||||||||| |||| || ||||||||||||||    
T  10339061 gcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 10339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 26247542 - 26247479
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgtt-gtatccgacaccgacac 229  Q
    |||||||||||||  ||||||||||||| ||||||| |||||||||| || ||||||||||||||    
T  26247542 cacggacactcctcagattaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgacac 26247479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 32511613 - 32511689
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||  ||||||| ||| |||| |||| ||||  ||| |||||||||||| |||||| |||||||||    
T  32511613 gcacggacactcctccgattaggcgtgctccgatgtcagacatatgtcgtatccgacaccaacacttataattacac 32511689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 7625228 - 7625185
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacg 208  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  7625228 gcacgaacactccttggattaagcgtgttccggtgtcggacacg 7625185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 9523001 - 9522950
Alignment:
Q  178 ttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||| ||||  ||||||||||||||||| | |||||||||||||||    
T  9523001 ttggattaggcgtgtctcggtgtcggacacgtgtcggatccgacaccgacac 9522950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 1316039 - 1315969
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    |||||| || || ||||| |||||| |||||||||||| ||  ||  ||||||||||||||||||||||||    
T  1316039 gacacttctcgggttaggcgtgttctggtgtcggacacatgacgtgcccgacaccgacacttgtaattaca 1315969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 2545555 - 2545509
Alignment:
Q  167 acggacactccttggattaggtgtgttccggtgtcggacacgtgttg 213  Q
    |||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  2545555 acggacactcattggattaggtgtgctccggtgtcagacacatgttg 2545509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 10827493 - 10827555
Alignment:
Q  167 acggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||| ||  ||||||| || ||||| ||||||||||||||||| |||||||| |||||    
T  10827493 acggacacttctatgattaggcgtattccgatgtcggacacgtgttgtgtccgacacagacac 10827555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 17327597 - 17327655
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||||||||||||| |||||||| |||| || ||||| ||||||||| || ||||||||    
T  17327597 gcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacac 17327655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 1191660 - 1191723
Alignment:
Q  175 tccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||| |||||||||||||   ||||||||||||| || || ||| ||| ||||||||||||||||||    
T  1191660 tcctcggattaggtgtgt---ggtgtcggacacgcgtcgtgtccaacatcgacacttgtaattacac 1191723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 18367959 - 18367895
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| ||| |||| || ||||| |||| |||| || || |||||||||||    
T  18367959 gcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 23771658 - 23771614
Alignment:
Q  197 gtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| ||| || ||||||||||||| ||||||||||||    
T  23771658 gtgtcggacacatgtcgtgtccgacaccgacatttgtaattacac 23771614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 34446683 - 34446647
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtc 201  Q
    |||||||||||||||||||||||||||| || |||||    
T  34446683 gcacggacactccttggattaggtgtgtcccagtgtc 34446647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 21191003 - 21191079
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21191003 gcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacac 21191079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 21576692 - 21576768
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| || ||||| ||||||||| || ||||||| ||||||||||||||||||    
T  21576692 gcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacac 21576768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 21522875 - 21522809
Alignment:
Q  163 atgcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||||||| || ||||||||||||||    
T  21522875 atgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 21533441 - 21533375
Alignment:
Q  163 atgcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||||||| || ||||||||||||||    
T  21533441 atgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21533375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 21542155 - 21542089
Alignment:
Q  163 atgcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| |||||||||| || |||| |||||||||||||||||| || ||||||||||||||    
T  21542155 atgcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 30098985 - 30099061
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||||||||||||| ||| |||| || ||||| ||||||||| ||||||||||||||||| | |||||||||    
T  30098985 gcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattacac 30099061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 42893468 - 42893396
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||   |||||| |||| | ||||||||||||||||||| || |||||||||||||||||||||||    
T  42893468 ggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacac 42893396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 43564993 - 43564917
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| || |||||||| |||| |||| ||||||||| ||| || |||||||||||||||| |||||||||    
T  43564993 gcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacac 43564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 14873634 - 14873577
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgaca 222  Q
    |||||||||||||| |||||||| |||| ||||||| ||||||||||||  |||||||    
T  14873634 gcacggacactcctcggattaggcgtgtcccggtgttggacacgtgttgcgtccgaca 14873577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 17088402 - 17088358
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtg 210  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||    
T  17088402 cacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 17088358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 30502335 - 30502411
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||| |||||||||||||  ||| || |||||||||| |||| || |||||||||||||| | |||||||||    
T  30502335 gcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacac 30502411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 30542678 - 30542754
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||| |||||||||||||  ||| || |||||||||| |||| || |||||||||||||| | |||||||||    
T  30542678 gcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacac 30542754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 39268545 - 39268609
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||| |||| || ||||||||||| ||| || ||| ||||||||||    
T  39268545 gcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacac 39268609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 39698664 - 39698600
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||| ||||  |||||||||| || ||| || ||||||||||||||    
T  39698664 gcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacac 39698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 15382592 - 15382533
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||| |||||||| |||| ||||||||||||| |||| || ||| ||||||||||    
T  15382592 gacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccaacaccgacac 15382533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 31084439 - 31084360
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac-----cgacacttgtaattaca 240  Q
    ||||||||||||| ||||||||  ||| || ||||||||||||||| || ||||||||     |||||||||||||||||    
T  31084439 cacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattaca 31084360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 26312875 - 26312805
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| ||||||||||||| | |||||| ||||||| | || ||||||||||| || | |||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacac 26312805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 30098449 - 30098391
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    ||||||||| |||| ||||||||||||| | |||||| ||||||||| || ||||||||    
T  30098449 gcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 32630687 - 32630757
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||| | |||||||||||  |  |||||||||||||| ||||||||||| ||||| | ||||||||    
T  32630687 gacactcctcgaattaggtgtgtctcaatgtcggacacgtgtcgtatccgacactgacacatataattaca 32630757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 38464320 - 38464361
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggaca 206  Q
    |||| ||||||||| ||||||||||||| |||||||||||||    
T  38464320 gcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 6401621 - 6401557
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| ||| || | || ||||| ||||||||| || |||||||| |||||    
T  6401621 gcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacac 6401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 18592196 - 18592132
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||| | | |||||  |||| ||| |||| |||||||||||| ||||||||||||||    
T  18592196 gcacggacactcatcgaattagccgtgtcccgatgtcagacacgtgttgtgtccgacaccgacac 18592132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 23292933 - 23293006
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatta 238  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||    
T  23292933 gcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatta 23293006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 38846975 - 38847035
Alignment:
Q  181 gattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  38846975 gattaggtatgttctggtgtcggacacgtgtcgtatccgacactgacacttgtaattacac 38847035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 21945610 - 21945539
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||  | ||||||||||||||||||||||||||    
T  21945610 gacactcctcggattaggcgtgttgcggtgtcggacatgtgtcatgtccgacaccgacacttgtaattacac 21945539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 30982814 - 30982878
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||| |||||||||| |||| |||||||||||||||||| || || |||||||||||    
T  30982814 gcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 34306767 - 34306827
Alignment:
Q  181 gattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||| ||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  34306767 gattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 34306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 35161148 - 35161072
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || |||||| | || |||| |||||||||    
T  35161148 gcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacac 35161072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 49431134 - 49431062
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||| ||| |||| ||||||| |||||||||| || |||||||||||||||| |||||||||    
T  49431134 ggacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacac 49431062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 3947708 - 3947766
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||||||||||||| ||||||||||||| | |||||||||||||||| || ||||||||    
T  3947708 gcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 2361922 - 2361998
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||| |  ||||||||||||  ||||||| |||||| || || |||||||||||||||| |||||||||    
T  2361922 gcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacac 2361998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 4157261 - 4157189
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatt 237  Q
    |||| ||||||||| | ||||||||| |  |||||||||||| |||| || ||||||||||||||||||||||    
T  4157261 gcacagacactcctcgaattaggtgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 4672032 - 4672096
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||| |||||||||||||||||   |||||| |||||| |||||| |||||||||||||||||||    
T  4672032 gcacagacactccttggattagacatgttccagtgtcgaacacgttttgtatccgacaccgacac 4672096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 5414108 - 5414172
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| |||||||| || ||||| ||||||||| || |||||||| |||||    
T  5414108 gcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacac 5414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 12895221 - 12895297
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||||| |||||||| |||| ||| ||||||| || ||| || |||||||||||||||| |||||||||    
T  12895221 gcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacac 12895297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 28964199 - 28964271
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||||||| |||| || |||||||| | |||| || |||||||| |||||||||||||||||    
T  28964199 ggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacac 28964271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 35157932 - 35158008
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| || |||||| | |||||||||||| ||||| |||| || || ||||||||||||| |||||||||    
T  35157932 gcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacac 35158008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 848073 - 848015
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacacc 224  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| | || |||||||||    
T  848073 cacggacactccttggattaggtgtgtcccggtgttcgacacgtttcgtgtccgacacc 848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 20743213 - 20743259
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||    
T  20743213 gcacggacactcatcggattagatgtgttccggtgtcggacacgtgt 20743259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 53381537 - 53381602
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt-tgtatccgacaccgacac 229  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| ||  || ||||||||||||||    
T  53381537 gcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacac 53381602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 8423665 - 8423741
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| ||  ||||||| |||| |||||||||||||  ||| || ||||||||||||| || |||||||||    
T  8423665 gcacggacacttctccgattaggcgtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacac 8423741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 15724498 - 15724554
Alignment:
Q  173 actccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||| |||||||| |||||  |||||| |||||||||||| ||||||||||||||    
T  15724498 actcctcggattaggcgtgttttggtgtctgacacgtgttgtgtccgacaccgacac 15724554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 16073502 - 16073430
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||||||| ||||    |||||||||| || | || ||||||||||||||||||||||||||    
T  16073502 ggacactcctcggattaggcgtgtcttagtgtcggacatgtatcgtgtccgacaccgacacttgtaattacac 16073430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 19482791 - 19482727
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||| |||||||| ||||||||||||| || ||||||||||||||| || ||| | ||||||||    
T  19482791 gcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacac 19482727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 29205532 - 29205480
Alignment:
Q  189 gtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||| ||||||||||||| |||| || ||| ||||||||||||||||||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacac 29205480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 42640636 - 42640565
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||| |||||| |||||||| |||| | |||| |||||||||||     |||||||||||||||||||||||||    
T  42640636 gcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgt-----ccgacaccgacacttgtaattacac 42640565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 715552 - 715630
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt--tgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| || |||||||||| ||||  ||||   |||||| ||||||||||||||||    
T  715552 gcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacac 715630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 752878 - 752956
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt--tgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| || |||||||||| ||||  ||||   |||||| ||||||||||||||||    
T  752878 gcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacac 752956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 4157543 - 4157476
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatt 237  Q
    ||||||||| | |||||| || |  |||||||||||| |||| || ||||||||||||||||||||||    
T  4157543 gacactcctcgaattaggcgtttctcggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 18966621 - 18966567
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccg 219  Q
    ||||||||||||||| ||||||| || | ||| ||||||||||||||||| ||||    
T  18966621 gcacggacactccttagattaggcgtatcccgttgtcggacacgtgttgtgtccg 18966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 28084636 - 28084590
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||||||||| |||||||| |||| || |||||||||||||||    
T  28084636 gcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgt 28084590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 9996936 - 9996891
Alignment:
Q  181 gattaggtgtgttccggtgtcggacacgtgttgtatccgacaccga 226  Q
    ||||||||||||||| |||||||||||||||| | || ||||||||    
T  9996936 gattaggtgtgttccagtgtcggacacgtgttatgtctgacaccga 9996891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 11931403 - 11931362
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggaca 206  Q
    ||||||||||||| |||||||||||||| | |||||||||||    
T  11931403 gcacggacactccatggattaggtgtgtcctggtgtcggaca 11931362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 12324032 - 12323967
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacact 230  Q
    |||||||||||||| |||| ||||||||||| ||| |  ||||||||  | |||||||||||||||    
T  12324032 gcacggacactcctcggataaggtgtgttcccgtgccacacacgtgtcatgtccgacaccgacact 12323967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 17876278 - 17876237
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggaca 206  Q
    |||| ||||||||||||||||||||||| | |||||||||||    
T  17876278 gcacagacactccttggattaggtgtgtcctggtgtcggaca 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 21873306 - 21873355
Alignment:
Q  162 tatgcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||  ||||||||||||||||  |||| ||||||||||||||||||    
T  21873306 tatgcacaaacactccttggattagacgtgtcccggtgtcggacacgtgt 21873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 21929167 - 21929216
Alignment:
Q  162 tatgcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||  ||||||||||||||||  |||| ||||||||||||||||||    
T  21929167 tatgcacaaacactccttggattagacgtgtcccggtgtcggacacgtgt 21929216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 40481743 - 40481690
Alignment:
Q  175 tccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    |||| |||||| ||||||| ||||||||||||||||| || ||| |||||||||    
T  40481743 tcctcggattaagtgtgtttcggtgtcggacacgtgtcgtgtccaacaccgaca 40481690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 7424765 - 7424722
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttg 213  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||    
T  7424765 ggacactccttggattaggcgtg-tacggtgtcggacacgtgttg 7424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 12797285 - 12797361
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||| |||| |||||||   ||| |||||||| |||| || | || ||||||||||||||||||||||||||    
T  12797285 gcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacac 12797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 22234826 - 22234890
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||| ||||| || ||||||| ||||| | |||||||||||||||| || || |||||||||||    
T  22234826 gcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacac 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 40784065 - 40784029
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtc 201  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  40784065 gcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 54580006 - 54580046
Alignment:
Q  201 cggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  54580006 cggacacgtgtcgtgtccgacaccgacacttataattacac 54580046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 55401187 - 55401111
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| ||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  55401187 gcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 55401111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 7171607 - 7171537
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||| ||||  ||||||||||||||||| || ||||||||| ||||||||||||||||    
T  7171607 acactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacac 7171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 15999955 - 16000039
Alignment:
Q  163 atgcacggacactccttggattaggtgtgttccggtgtcggacacgtgt--tgta----tccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||    ||||||||||||||||||| ||||||    
T  15999955 atgcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacgtgtccgacaccgacacttgtagttacac 16000039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 20503577 - 20503501
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| |||||||| |||| |||| || ||| ||||||||||||||||||||||    
T  20503577 gcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacac 20503501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 18427060 - 18426985
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||  |||||||||||| |||||| ||||||||||| ||||||||||||||||  | |||||||||    
T  18427060 cacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacac 18426985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 28918111 - 28918037
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatc--cgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||| |||| || ||||||||||||||| || ||  ||||||||||||||||||||||||    
T  28918111 ggacactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacac 28918037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 10955056 - 10954988
Alignment:
Q  173 actccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||| |||||||| |||| || ||||||||||||||| || |||||||||||||||||| |||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacac 10954988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 15796230 - 15796294
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||| |||||| |||||||||| |||||||||||| ||||||||||||| ||||||||| ||||    
T  15796230 gcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacac 15796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 40993286 - 40993358
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||||||| |||| ||||||||||||| |||| || |||||||||||||| | |||||||||    
T  40993286 ggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacac 40993358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 4987229 - 4987291
Alignment:
Q  167 acggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||| |||||||| |||| |||||||||||||||||| || ||| ||||||||||    
T  4987229 acggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 4987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 27505363 - 27505282
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatc-----cgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||||||||  ||| |||||||||||||||||| || ||     ||||||||||||||||||||||||    
T  27505363 gcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacac 27505282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 11252088 - 11252024
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||| ||||||||| |||||||| |||||||| || |||||||||||||| || |||||||||||    
T  11252088 gcacagacactcctcggattaggcgtgttccgatgccggacacgtgttgtgtctgacaccgacac 11252024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 14209236 - 14209172
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| |||||||||||||| | ||| ||||| |||||||| || ||||||||||||||    
T  14209236 gcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacac 14209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 51206300 - 51206376
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||||||  || | |||||||||||| ||   ||| ||||||||||||||||||| ||||||    
T  51206300 gcacggacactccttggattagaggtatcccggtgtcggacgcgacatgtgtccgacaccgacacttgtatttacac 51206376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 25775619 - 25775545
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||||| |||||||| |||| | |||||||||||||   |||  |||||||||||||||||||||||||    
T  25775619 gcacgaacactcctcggattaggcgtgtcctggtgtcggacacgacgtgt--ccgacaccgacacttgtaattacac 25775545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 13845472 - 13845548
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||| ||| ||||  | ||||| ||||||| | || |||||||||||||| | |||||||||    
T  13845472 gcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattacac 13845548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 41961586 - 41961650
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| || |||||||| |||| || ||||||||||||||| || ||||| ||||||||    
T  41961586 gcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 41961650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 55213085 - 55213021
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||| ||| ||||||||| | ||||  ||||||||||||||||||||  |||||||||||||    
T  55213085 gcacggatacttcttggattatgcgtgtctcggtgtcggacacgtgttgtgcccgacaccgacac 55213021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 8039324 - 8039265
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtg-ttgtatccgacaccgacac 229  Q
    |||||||||||||||||||||| |||| |||||||||| | |||||| |||||| |||||    
T  8039324 acactccttggattaggtgtgtcccggagtcggacacgcgtttgtattcgacactgacac 8039265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 14217015 - 14216957
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    ||||||||||| || ||||||||||||| || |||||| |||||||| || ||||||||    
T  14217015 gcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14216957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 14223144 - 14223086
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    ||||||||||| || ||||||||||||| || |||||| |||||||| || ||||||||    
T  14223144 gcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14223086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 34185059 - 34185101
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacac 207  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  34185059 gcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 12704598 - 12704663
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgtt-gtatccgacaccgacac 229  Q
    |||||||||||||| |||||||  |||||| ||||||||||| | ||| || ||||||||||||||    
T  12704598 gcacggacactcctaggattagacgtgttctggtgtcggacatgcgttggtgtccgacaccgacac 12704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 25074907 - 25074842
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgtt-gtatccgacaccgacac 229  Q
    ||||| |||||||| ||||||||||||| || |||||||||||| ||| || || |||||||||||    
T  25074907 gcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacac 25074842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 37077482 - 37077441
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggaca 206  Q
    ||||||||| |||||||||||||||||| || ||||||||||    
T  37077482 gcacggacattccttggattaggtgtgtccccgtgtcggaca 37077441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 3631796 - 3631720
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||| |||| |||| | ||||||||||| |||| || |||||||| | ||| | |||||||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacac 3631720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 25093582 - 25093538
Alignment:
Q  197 gtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| ||||||| |||||||||||||| | |||||||||    
T  25093582 gtgtcggacatgtgttgtgtccgacaccgacacatataattacac 25093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 40052424 - 40052380
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgt 209  Q
    ||||| |||||||| |||||||| |||| ||||||||||||||||    
T  40052424 gcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 18190061 - 18190131
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacac 18190131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 18337441 - 18337365
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||| |||  ||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  18337441 gcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacac 18337365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 22515834 - 22515910
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| ||||  |||||||||| | |||| || ||||||||||||||||||||||||||    
T  22515834 gcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacac 22515910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 37598943 - 37598867
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| ||  |||||||||||||| || |||||||||||||||| |||||||||    
T  37598943 gcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacac 37598867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 42359396 - 42359472
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| ||||||||||||||  ||  | ||||||||||||||||||||||||||    
T  42359396 gcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacac 42359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 46348330 - 46348406
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| ||| |||| ||| ||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  46348330 gcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 46348406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 51410129 - 51410061
Alignment:
Q  173 actccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||| ||||  |||||||||| |||||| || ||||||||||||||||||||||||||    
T  51410129 actccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacac 51410061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 19562567 - 19562626
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  19562567 gacactcctcggattaggtgtgtccctgtgtcggacacgtgttgtatccgacactgacac 19562626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 40258884 - 40258956
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||||||| |||| | ||||||||||| |||| || || |||||||||||||||||||||||    
T  40258884 ggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacac 40258956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 1815368 - 1815293
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||||  ||||||| |||| ||||||||||||| |||| || || |||||||||||||||||||||||    
T  1815368 cacggtcactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacac 1815293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 40181976 - 40181907
Alignment:
Q  172 cactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||| |||||||| |||| ||||||| ||||||||||||| ||||||||||| || | |||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacac 40181907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 31694646 - 31694710
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||  ||||||| |||||||||||||| | | ||||||| ||||||||||||||    
T  31694646 gcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacac 31694710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 32461400 - 32461464
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| ||||||||||| |||| || ||||| ||||||||| || ||||||||||||||    
T  32461400 gcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac 32461464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 40917872 - 40917808
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||| |||| |||||||| |||| |||||||||||||||||| || ||| ||||||||||    
T  40917872 gcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 40917808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 1486651 - 1486709
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||| ||||||||| |||||||| |||| |||||||||||||||||| || ||||||||    
T  1486651 gcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 15323275 - 15323234
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  15323275 gacactcctcggattaggtgtgtttcggtgtcggacacgtgt 15323234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 5898213 - 5898289
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||  |||| ||||||| |||||||||| || || ||||||||| | | |||||||||    
T  5898213 gcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacac 5898289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 9828167 - 9828103
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||  |||| |||||||||||||||||| || || ||||| |||||    
T  9828167 gcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacac 9828103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 18471405 - 18471361
Alignment:
Q  167 acggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||||||| | |||||||||||| |||||||||||||||||    
T  18471405 acggacactcctcgaattaggtgtgtttcggtgtcggacacgtgt 18471361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 25934739 - 25934675
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| ||| || | || ||||| ||||||||| || ||||||||||||||    
T  25934739 gcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacac 25934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 47989620 - 47989556
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||| |||| ||| |||| |||| |||| || ||||||||||||||    
T  47989620 gcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacac 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 1704946 - 1705013
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattac 239  Q
    ||||||||||||||||||| ||||  |||||||||||||  |||| |  ||||||||||||||||||||||    
T  1704946 ggacactccttggattaggcgtgtctcggtgtcggacac--gttg-acacgacaccgacacttgtaattac 1705013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 2896072 - 2896131
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    ||||||| |||||||||||||||| ||||| |||||||| ||| || || ||||||||||    
T  2896072 ggacacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgaca 2896131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 38078616 - 38078683
Alignment:
Q  173 actccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    |||||| |||||||| |||| | ||||| | ||| |||| || |||||||||||||||||||||||||    
T  38078616 actcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattaca 38078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 46940755 - 46940798
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacg 208  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||    
T  46940755 gcacgaacactcctcggattaggcgtgttccggtgtcggacacg 46940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 29144327 - 29144369
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacac 207  Q
    |||||||||||| | |||||||| |||||||||||||||||||    
T  29144327 gcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 43492456 - 43492505
Alignment:
Q  180 ggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||| |||| ||||||||||||| ||||||| || |||||||||||    
T  43492456 ggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacac 43492505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 5944406 - 5944342
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||| |||||||| |||||||| || | ||||||||||||| ||||||| |||| || ||||||    
T  5944406 gcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacac 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 6427587 - 6427531
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgac 221  Q
    |||||||||||| |  ||||||| |||| |||||||||||||||||| || ||||||    
T  6427587 gcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgac 6427531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 10577682 - 10577758
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||| ||| |||| || ||||| |||||| || || |||| | ||||||| | |||||||||    
T  10577682 gcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccgcccccgacacatataattacac 10577758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 39130718 - 39130790
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| |||||||| | |||| ||  |||||  |||||||||| |||||||||||||| | |||||||||    
T  39130718 ggacactctttggattaagcgtgtcccaatgtcgagcacgtgttgtgtccgacaccgacacatataattacac 39130790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 9778617 - 9778559
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  9778617 gcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 13770808 - 13770727
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac-----cgacacttgtaattacac 241  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||     ||||||||||||||||||    
T  13770808 gcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacacgacaacgacacttgtaattacac 13770727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 21880264 - 21880188
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||| || |||||||| |||| | ||||||||||| |||| || ||||||||||||||||||||||||||    
T  21880264 gcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacac 21880188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 15680921 - 15680845
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| | |||||  ||||  ||||||||||||||||| || |||||||||||||||| |||||||||    
T  15680921 gcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacac 15680845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 21864920 - 21864844
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||| ||||||||| | |||||  |||| |||||||||||||||||| || ||||||| ||||||||||||||||||    
T  21864920 gcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacac 21864844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 32287410 - 32287474
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||  | ||||||||||||||    
T  32287410 gcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacac 32287474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 598320 - 598245
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||| || || |||||||||||||  |||||||    
T  598320 gcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattaca 598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 5409778 - 5409836
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacac 223  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||| || ||||||||    
T  5409778 gcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 7197273 - 7197319
Alignment:
Q  194 ccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  7197273 ccggtgtcggacatgtgttgtgtccgacaccgacacttgtaattaca 7197319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24105784 - 24105714
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||| || ||||| |||| |||||||||||||| ||||||  ||||| |||||||||||||||||||    
T  24105784 acactcctcgggttaggcgtgtcccggtgtcggacacatgttgtgcccgactccgacacttgtaattacac 24105714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 24339765 - 24339701
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||| ||||||| |||||||| |||| ||||||||||| |||||| || ||||||||||||||    
T  24339765 gcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacac 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 33994323 - 33994252
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatt 237  Q
    |||| ||||||||||||||||| ||||  |||||| ||||| |||| || || |||||||||||||||||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaatt 33994252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 43027411 - 43027492
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatc-----cgacaccgacacttgtaattacac 241  Q
    |||||||||||| | |||||||| |||| |||||||||||||||||| || ||     ||||||||||||||||| ||||||    
T  43027411 gcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacacgacaccgacacttgtatttacac 43027492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 20549903 - 20549827
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||| ||||||| |||||||| ||||  |  ||||||||| ||||||| |||||||||||||| | |||||||||    
T  20549903 gcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacac 20549827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 40287309 - 40287380
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| ||||||||  ||| |||||||||||||     ||| ||||| ||||||||||||||||||||    
T  40287309 gcacggacactcctcggattaggcatgtcccggtgtcggaca-----tgtgtccgataccgacacttgtaattacac 40287380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 8234245 - 8234182
Alignment:
Q  178 ttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| ||||  |||||||||||| |||| || |||||||||| ||||||||| |||||    
T  8234245 ttggattaggcgtgtctcggtgtcggacatgtgtcgtgtccgacaccggcacttgtaactacac 8234182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 11665376 - 11665439
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    ||||||||| |||| | ||||| |||||| ||||||||||||||||| || | |||||||||||    
T  11665376 gcacggacattcctcgtattagatgtgtttcggtgtcggacacgtgtcgtgttcgacaccgaca 11665439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 26033398 - 26033461
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||| |||||||||||||  |||| ||||||||||||  | || |||||||||||    
T  26033398 cacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacac 26033461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 17852112 - 17852066
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    |||||||||||||| | |||||||||||  |||||||||||||||||    
T  17852112 gcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgt 17852066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 8842286 - 8842323
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcg 202  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  8842286 gcacggacactccttggattaggcgtgtcccggtgtcg 8842323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 12278943 - 12278871
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgtt-gtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| ||||||||||||| |||||||| |||||| ||| || ||||||| |||||| | |||||||||    
T  12278943 ggacactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgaca-cgacacatataattacac 12278871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 21930736 - 21930687
Alignment:
Q  180 ggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||||||| ||||||||||| |||| ||| |||| |||||    
T  21930736 ggattaggtgtgttccggcgtcggacacgtcttgtgtccaacactgacac 21930687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 22868155 - 22868110
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgt 214  Q
    |||||||||| |||||| |||||| |||||||| ||||||||||||    
T  22868155 ggacactcctcggattatgtgtgtcccggtgtctgacacgtgttgt 22868110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 29510240 - 29510305
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacact 230  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| || || |||||||||||||||    
T  29510240 gcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacact 29510305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 5813704 - 5813628
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||   |||||| |||| |||||||||||||||||| || ||||||||||||||||||| ||||||    
T  5813704 gcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacac 5813628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 40332302 - 40332227
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||| |||||||| | || ||||||| |||||||||| || ||| ||||||||||||||||||||||    
T  40332302 cacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacac 40332227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 4498415 - 4498342
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatta 238  Q
    ||||||||||||||  ||||||||||||| |||||||||| || |||| ||| |||||||||||||| ||||||    
T  4498415 gcacggacactcctctgattaggtgtgtttcggtgtcggatacatgttatattcgacaccgacacttataatta 4498342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 15023208 - 15023280
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| |||||||  ||||||| |  |||||||||||| |||||||||| ||||||||||||||||||    
T  15023208 ggacactcctcggattagacgtgttccagcatcggacacgtgtcgtatccgacatcgacacttgtaattacac 15023280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 36450701 - 36450777
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||| ||||||||| |||||||| |||| | ||||||||||||| || || ||||||||| ||||||||||||||||    
T  36450701 gcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacac 36450777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 926735 - 926811
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||| | |  ||| |||||||||||||||||| |  |||||||||||||||| |||||||||    
T  926735 gcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacac 926811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 3951483 - 3951547
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||| ||||||||||||||| ||||||| ||||| ||||||||| || || |||||||||||    
T  3951483 gcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacac 3951547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 20679346 - 20679418
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||  || ||||||||||||| |||||||||    
T  20679346 ggacactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacac 20679418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 22652099 - 22652035
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||  |||| |||||||||||||| ||| || ||||||||||||||    
T  22652099 gcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacac 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 31557104 - 31557032
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||| |||||||||||| |||| | ||||||||||| |||| || || |||||||| ||||||||||||||    
T  31557104 ggacacaccttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacac 31557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 34450968 - 34451032
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||||||||| ||| |||| || ||||| ||||||||| || ||||||||||||||    
T  34450968 gcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 34451032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 24205756 - 24205819
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||||| |||||||| ||||||||||||| |||| | ||||| | ||||||||||||    
T  24205756 cacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacac 24205819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 8798804 - 8798842
Alignment:
Q  169 ggacactccttggattaggtgtgttccggtgtcggacac 207  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  8798804 ggacactccttggattaggcgtgttccggtgtcggacac 8798842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 6065593 - 6065650
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgaca 222  Q
    |||||||||||||||| |||| | |||||||||||||||||| |||| || |||||||    
T  6065593 gcacggacactccttgaattatgcgtgttccggtgtcggacatgtgtcgtgtccgaca 6065650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 33405331 - 33405407
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||| |||||||||  |||| | |||||| |||| |||| || |||||||||||||| | |||||||||    
T  33405331 gcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacac 33405407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 43737758 - 43737834
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||||||| ||| || | || ||||| ||||| ||| || |||||||||||||| | |||||||||    
T  43737758 gcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccgacacatataattacac 43737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 4673361 - 4673400
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcgga 204  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  4673361 gcacagacactccttggattaggcgtgttccggtgtcgga 4673400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 29447046 - 29447109
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    |||||||||||||| |||||||| |||| | |||||| ||||| ||| || |||||||||||||    
T  29447046 gcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgaca 29447109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 126295 - 126369
Alignment:
Q  166 cacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||||| |||||||  |||| ||||| | |||||||||| || |||||||| ||||| | ||||||||    
T  126295 cacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 20873151 - 20873105
Alignment:
Q  195 cggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||| |||||||||| | || ||||||||||||||||||||||||||    
T  20873151 cggtatcggacacgtatcgtgtccgacaccgacacttgtaattacac 20873105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 22197678 - 22197724
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    ||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  22197678 gcacggacactcctcagattaggcgtgatccggtgtcggacacgtgt 22197724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 40064074 - 40064032
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacac 207  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||    
T  40064074 gcacggacactcctcggattagatgtgtcccggtgtcggacac 40064032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 14513127 - 14513156
Alignment:
Q  177 cttggattaggtgtgttccggtgtcggaca 206  Q
    ||||||||||||||||||||||||||||||    
T  14513127 cttggattaggtgtgttccggtgtcggaca 14513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 22943301 - 22943342
Alignment:
Q  170 gacactccttggattaggtgtgttccggtgtcggacacgtgt 211  Q
    ||||||||| |||||||| |||| ||||||||||||||||||    
T  22943301 gacactcctcggattaggcgtgtcccggtgtcggacacgtgt 22943342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 26434292 - 26434219
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaatta 238  Q
    |||| |||||| |||| |||| |||||||  ||||| |||||||| |||| ||| |||||||||||| ||||||    
T  26434292 gcacagacacttcttgaattatgtgtgttttggtgttggacacgtattgtgtccaacaccgacacttttaatta 26434219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 3025663 - 3025587
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||  ||||  | ||||| ||||||||| || |||||||| ||||| | |||||||||    
T  3025663 gcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacac 3025587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 11803382 - 11803318
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||  |||| || |||||||||| |||| |||||| ||||| ||||    
T  11803382 gcacggacactcctcggattagacgtgtacctgtgtcggacatgtgtcgtatccaacaccaacac 11803318  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 15816065 - 15816129
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| || |||||||| |||| |||||||||||  ||||| || ||||||||| ||||    
T  15816065 gcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacac 15816129  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 18407831 - 18407755
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||||||||||   |||||| |||| |  |||||||||| |||| || |||| || ||||||||||||||||||    
T  18407831 gcacggacactcctccaattaggcgtgtcctagtgtcggacatgtgtcgtgtccggcagcgacacttgtaattacac 18407755  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 34127179 - 34127215
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtc 201  Q
    |||||||||||||||||||||||||||| | ||||||    
T  34127179 gcacggacactccttggattaggtgtgtccaggtgtc 34127215  T

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Target: scaffold0053 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 8910 - 8834
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||||| ||||||  ||||||| ||||  ||||||||||||||||| || ||||||||||||||||||||||||||    
T  8910 gcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacac 8834  T

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Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 71848 - 71784
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||| ||||||||| |||||||  |||| ||||||||||||||||||||| ||||||||||||||    
T  71848 gcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacac 71784  T

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Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 13518 - 13454
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||||||||||||||||| |  ||||| ||| ||||| || ||||||||||||||    
T  13518 gcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 13454  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 21809 - 21873
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||||||||||||||||| |  ||||| ||| ||||| || ||||||||||||||    
T  21809 gcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacac 21873  T

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Target: scaffold0086 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 3051 - 2987
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||| || || || ||||||||    
T  3051 gcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacac 2987  T

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Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 45477 - 45553
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||| || ||||||||||  |||  ||||||| ||||||||| || ||||||||||||||||||||||||||    
T  45477 gcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacac 45553  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 70390 - 70314
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| |||||| | ||||||||  ||| | |||||||||||||||| || |||||||||||||||| |||||||||    
T  70390 gcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacac 70314  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 241717 - 241653
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||| || ||||||||| ||||    
T  241717 gcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacac 241653  T

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Target: scaffold0512 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 4983 - 5058
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    |||| ||||||||| ||||||||  |||  |  |||||||||||||| || |||||||||||||||||||||||||    
T  4983 gcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacaccgacacttgtaattaca 5058  T

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Target: scaffold0361 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 14639 - 14566
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    ||||| ||||||||| ||||||| ||||  ||||||||||||||||| || ||||||||   |||||||||||||||    
T  14639 gcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac---cacttgtaattacac 14566  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 53304 - 53239
Alignment:
Q  164 tgcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||| |||||||||   |||| ||||||||||||||||||  | ||||||||||||||    
T  53304 tgcacggacacttcttggattaaacgtgtcccggtgtcggacacgtgtcatgtccgacaccgacac 53239  T

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Target: scaffold0475 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 3420 - 3344
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| || |||||   |||||||  | |||||||| |||||||||||||||||    
T  3420 gcacggacactcctcggattaggcgtgtcccagtgtccaccacgtgtcttgtccgacactgacacttgtaattacac 3344  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 174510 - 174574
Alignment:
Q  175 tccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattac 239  Q
    ||||||||||||| |||||||| |||||||||| ||  || ||| ||||||||| ||||||||||    
T  174510 tccttggattaggcgtgttccgatgtcggacacatgacgtgtccaacaccgacatttgtaattac 174574  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 180023 - 180087
Alignment:
Q  175 tccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattac 239  Q
    ||||||||||||| |||||||| |||||||||| ||  || ||| ||||||||| ||||||||||    
T  180023 tccttggattaggcgtgttccgatgtcggacacatgacgtgtccaacaccgacatttgtaattac 180087  T

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Target: scaffold0793 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 4828 - 4906
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgt--tgtatccgacaccgacacttgtaattacac 241  Q
    |||||||||||||| |||||||| |||| || |||||||||| ||||  ||||   |||||| ||||||||||||||||    
T  4828 gcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacac 4906  T

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Target: scaffold0380 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 8713 - 8638
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattaca 240  Q
    ||||||||||||||||||||||| || | || ||||||||||||||| || | | |||| |||||  |||||||||    
T  8713 gcacggacactccttggattaggcgtatcccagtgtcggacacgtgtcgtgttcaacacagacacgagtaattaca 8638  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 13534 - 13472
Alignment:
Q  167 acggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||| ||||||||||| | ||| ||||| | |||||| || ||||||||||||||    
T  13534 acggacactcctcggattaggtgtatcccgatgtcgtatacgtgtcgtgtccgacaccgacac 13472  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 90949 - 90879
Alignment:
Q  171 acactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacacttgtaattacac 241  Q
    |||||| |||||||||| |||||  ||||||||||||||||||| || |||| |||||  | |||||||||    
T  90949 acactcattggattaggcgtgttttggtgtcggacacgtgttgtgtctgacatcgacatatataattacac 90879  T

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Target: scaffold0246 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 19682 - 19629
Alignment:
Q  175 tccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgaca 228  Q
    |||| |||||| ||||||| ||||||||||||||||| || ||| |||||||||    
T  19682 tcctcggattaagtgtgtttcggtgtcggacacgtgtcgtgtccaacaccgaca 19629  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 8571 - 8635
Alignment:
Q  165 gcacggacactccttggattaggtgtgttccggtgtcggacacgtgttgtatccgacaccgacac 229  Q
    |||||||||||||| | |||||| |||| || ||||||||||||| | || ||||| ||||||||    
T  8571 gcacggacactcctcgaattaggcgtgtaccagtgtcggacacgtatcgtgtccgataccgacac 8635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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