View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_76 (Length: 238)
Name: NF20076_low_76
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36487928 - 36487705
Alignment:
| Q |
1 |
aaaaatccccaaaataagatacaagctgtttacctttcatataaattcaatttcgattgcggtgttgaatttcaattaagctgttcagattgcaatgtac |
100 |
Q |
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| T |
36487928 |
aaaaatccccaaaataagatacaagctgtttacctttcatataaattcaatttcgattgcggtgttgaatttcaattaagctgttcagattgcaatgtac |
36487829 |
T |
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| Q |
101 |
aatttttgttttccacatgaactccatttatttggcagcgatgttaagggataattcatatcaatttttgtttgttgattggcattagacaatcacggtt |
200 |
Q |
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| T |
36487828 |
aatttttgttttccacatgaactccatttatttggcagcgatgttaagggataattcatatcaatttttgtttgttgaacggcattagacaatcacggtt |
36487729 |
T |
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| Q |
201 |
gttgaactttcaatcattattatg |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
36487728 |
gttgaactttcaatcattaatatg |
36487705 |
T |
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Back To:
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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 3382680 - 3382854
Alignment:
| Q |
1 |
aaaaatccccaaaataagatacaagctgtttacctttcatataaattcaatttcgattgcggtgttgaatttcaattaagctgttcagattgcaatgtac |
100 |
Q |
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||||||||||||||||||||| | |||||| |||||||||| || ||||| ||||| ||||||||| ||||||||||||||| ||||||| ||| || |
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| T |
3382680 |
aaaaatccccaaaataagataaa---tgtttaattttcatataagttgaattttgattgtggtgttgaacttcaattaagctgtttagattgcgatgcac |
3382776 |
T |
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| Q |
101 |
aatttttgttttccacatgaactccatttatttggcagcgatgttaagggataattcatatcaatttttgtttgttga |
178 |
Q |
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| |||||||||||||| |||||||||||||||||| | | || ||||||||||||||||| ||||||||| ||||||| |
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| T |
3382777 |
actttttgttttccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttga |
3382854 |
T |
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