View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_77 (Length: 236)
Name: NF20076_low_77
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 8358457 - 8358675
Alignment:
| Q |
3 |
tactataaggatctaagcatgctgtaatttactctaatttttatttcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttg |
102 |
Q |
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| T |
8358457 |
tactataaggatctaagcatgctgtaatttactctaatttttatttcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttg |
8358556 |
T |
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| Q |
103 |
gaaacaaaagtgaagcaatggaagagctatatgaagagttatgaatagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttataaat |
202 |
Q |
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| T |
8358557 |
gaaacaaaagtgaagcaatggaagagctatatgaagagttatgaatagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttataaat |
8358656 |
T |
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| Q |
203 |
tagaaagtaacgcaaaatt |
221 |
Q |
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||||||||||||||||||| |
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| T |
8358657 |
tagaaagtaacgcaaaatt |
8358675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 8367732 - 8367953
Alignment:
| Q |
16 |
taagcatgctgtaatttactctaatttttatttcaaataactatactaaaaacaatataaac---aaatatttatgtttacccacatttgga-aacaaaa |
111 |
Q |
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| T |
8367732 |
taagcatgttgcaatttactctaaattttatttcaaataactatactaaaaacaatataaacaataaatatttatgtttaccaacatttgaagaaaaaaa |
8367831 |
T |
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| Q |
112 |
gtgaagcaatg------------gaagagctatatgaagagttatgaatagtgcaaacaaacaatgaatttttcgctgtataaagcatttcttgtttata |
199 |
Q |
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| T |
8367832 |
gtgaagcaatgaatatgttcattaaagagctatacaaagagttataaacagtacaaacaaacaatgaatttttcgttgtataaagcatttttcgtttata |
8367931 |
T |
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| Q |
200 |
aattagaaagtaacgcaaaatt |
221 |
Q |
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| T |
8367932 |
aattagaaaagaacacaaaatt |
8367953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 8420999 - 8420904
Alignment:
| Q |
25 |
tgtaatttactctaatttttatttcaaataactatactaaaaacaatataaacaaatatttatgtttacccacatttggaaacaaaagtgaagcaatgga |
124 |
Q |
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|||||||||||| || ||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| |||||| |||||||||| |||||||||| |
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| T |
8420999 |
tgtaatttactcaaaattttatttcaaataactatcctaaaaataatat----aaataattatgtttaccatcatttgaaaacaaaagttaagcaatgga |
8420904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 8378861 - 8378922
Alignment:
| Q |
17 |
aagcatgctgtaatttactctaatttttatttcaaataactatactaaaaacaatataaacaa |
79 |
Q |
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||||||| ||||||||||| | |||||||||||||||||||||| |||||| ||||||||| |
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| T |
8378861 |
aagcatgttgtaatttactaaagattttatttcaaataactatact-aaaacagtataaacaa |
8378922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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