View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_79 (Length: 227)
Name: NF20076_low_79
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_79 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 50725765 - 50725994
Alignment:
| Q |
7 |
ctaattcaaagacaacgttacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctctacaaccatacatnnnnnnncaatatgttta |
106 |
Q |
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| T |
50725765 |
ctaattcaaagacaacattacaaaatgaaatgtagcatcagaaaataaatatgactatagttagatctctacaaccatacataaaaaaacaatatgttta |
50725864 |
T |
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| Q |
107 |
aatttttatttataatattccctcccttc----nnnnnnnnngattgagaagttgaaagtgtattatgaga-------gaggttcgatccatgttgctaa |
195 |
Q |
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| T |
50725865 |
aa-ttttatttataata-tccctcccttcaaaaaaaaaaaaagattgagaagttgaaagtgtattatgagagaggttcgaggttcgatccatgttgctaa |
50725962 |
T |
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| Q |
196 |
caaattcatactctcccttgcaaattaaccac |
227 |
Q |
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| T |
50725963 |
aaaattcatactctcccttgcaaattaaccac |
50725994 |
T |
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