View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20076_low_81 (Length: 224)

Name: NF20076_low_81
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20076_low_81
NF20076_low_81
[»] chr2 (5 HSPs)
chr2 (14-224)||(21624070-21624282)
chr2 (163-224)||(21374742-21374804)
chr2 (163-224)||(26769466-26769527)
chr2 (41-72)||(19281000-19281031)
chr2 (173-224)||(38117202-38117253)
[»] chr4 (4 HSPs)
chr4 (163-224)||(42640481-42640542)
chr4 (173-224)||(7251670-7251721)
chr4 (163-224)||(15029720-15029781)
chr4 (167-204)||(35158054-35158091)
[»] chr3 (5 HSPs)
chr3 (163-224)||(14747516-14747577)
chr3 (163-224)||(21479073-21479134)
chr3 (163-219)||(14027964-14028018)
chr3 (163-204)||(750688-750729)
chr3 (155-183)||(24633478-24633506)
[»] chr1 (6 HSPs)
chr1 (163-224)||(38078704-38078766)
chr1 (158-224)||(3490433-3490499)
chr1 (163-224)||(22881659-22881720)
chr1 (163-204)||(10577804-10577845)
chr1 (163-224)||(17831574-17831635)
chr1 (163-195)||(48548040-48548072)
[»] chr8 (2 HSPs)
chr8 (173-224)||(22595959-22596010)
chr8 (163-224)||(20785508-20785569)
[»] chr6 (5 HSPs)
chr6 (163-224)||(5970151-5970212)
chr6 (163-224)||(7801199-7801255)
chr6 (163-224)||(12868718-12868779)
chr6 (158-224)||(7377929-7377995)
chr6 (164-224)||(3209332-3209397)
[»] chr5 (5 HSPs)
chr5 (163-224)||(15382426-15382493)
chr5 (163-198)||(34276806-34276841)
chr5 (163-204)||(13287468-13287509)
chr5 (163-199)||(20683330-20683366)
chr5 (176-224)||(31084291-31084339)
[»] chr7 (1 HSPs)
chr7 (163-224)||(9778457-9778516)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 21624070 - 21624282
Alignment:
Q  14 acaataacatttgtaattgatacacactgcaatccgaggaggcacacacttaattttgtctccacaatccaagtcattatgacagtcatgagttgctgtg 113  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21624070 acaataacatttgtaattgatacataatgcaatccgaggaggcacacacttaattttgtctccacaatccaagtcattatgacagtcatgagttgctgtg 21624169  T
Q  114 at--nnnnnnnnnttacaaattttactaatcaaaaggtttgtaatattattaagcacggatacggacacggataccggacaca-acacgaacacgccgac 210  Q
    ||           ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||  |||||| ||||  ||||||||||    
T  21624170 ataaaaaaaaatattacaaattttactaatcaaaaggtttgtaatattatgaagcccggatacggacaccga-acacgacacagacactgacacgccgac 21624268  T
Q  211 acagctaataattt 224  Q
    ||||||||||||||    
T  21624269 acagctaataattt 21624282  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 21374804 - 21374742
Alignment:
Q  163 aagcacggatacggacacggataccggacac-aacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| |||||||||  |||| |||||||||||||||||||||||||    
T  21374804 aagcacggatacggacacggacaccggacacggacactaacacgccgacacagctaataattt 21374742  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 26769466 - 26769527
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| ||||||||| ||||  ||||||||||||| ||||||||||    
T  26769466 aagcacggatacggacacggacaccggacacgacacagacacgccgacacaactaataattt 26769527  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 19281000 - 19281031
Alignment:
Q  41 tgcaatccgaggaggcacacacttaattttgt 72  Q
    ||||||||||||||||||||||||||||||||    
T  19281000 tgcaatccgaggaggcacacacttaattttgt 19281031  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 38117253 - 38117202
Alignment:
Q  173 acggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| ||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  38117253 acggatacggacaccggacacgacactgacacgccgacacagctaataattt 38117202  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 42640481 - 42640542
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| |  |||||||||||| |||||||||||||||| |||||||    
T  42640481 aagcacggatacggacacggacattggacacaacacggacacgccgacacagctgataattt 42640542  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 7251721 - 7251670
Alignment:
Q  173 acggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| ||||| ||||||||||||||  | ||||||||||||||||||||||    
T  7251721 acggatacggacaccggacacaacacagaaacgccgacacagctaataattt 7251670  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 15029720 - 15029781
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| ||||||||||| ||| ||||||||| ||||  |||||| ||||| |||||||||||    
T  15029720 aagcagggatacggacatggagaccggacacgacactgacacgcagacactgctaataattt 15029781  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 35158091 - 35158054
Alignment:
Q  167 acggatacggacacggataccggacacaacacgaacac 204  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  35158091 acggatacggacacggacaccggacacaacacggacac 35158054  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 14747516 - 14747577
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||| ||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  14747516 aagcacggatacggatacggacaccggacacgacactgacacgccgacacagctaataattt 14747577  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 21479073 - 21479134
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| ||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  21479073 aagcatggatacggacacggacaccggacacgacactgacacgccgacacagctaataattt 21479134  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 14027964 - 14028018
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaat 219  Q
    ||||||||||||||||||||| ||||||||| ||||| |||  ||||||||||||||    
T  14027964 aagcacggatacggacacggacaccggacacgacacggaca--ccgacacagctaat 14028018  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 750729 - 750688
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacac 204  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||    
T  750729 aagcacggatacggacacggacaccggacacgacacggacac 750688  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 24633506 - 24633478
Alignment:
Q  155 atattattaagcacggatacggacacgga 183  Q
    |||||||||||||||||||||||||||||    
T  24633506 atattattaagcacggatacggacacgga 24633478  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 38078766 - 38078704
Alignment:
Q  163 aagcacggatacggacacggataccggacac-aacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||| ||||||||||||||||||    
T  38078766 aagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataattt 38078704  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 3490499 - 3490433
Alignment:
Q  158 ttattaagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||| ||||||||||||||| || || ||||||||| ||||  |||||||||||| |||||||||||    
T  3490499 ttatgaagcacggatacggatacagacaccggacacgacactgacacgccgacactgctaataattt 3490433  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 22881720 - 22881659
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||||||||||  |||||||| ||||||||| ||||  ||||||||||||| ||||||||||    
T  22881720 aagcacggatatagacacggacaccggacacgacactgacacgccgacacaactaataattt 22881659  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 10577845 - 10577804
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacac 204  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||    
T  10577845 aagcacggatacggacacggacaccggacacgacacggacac 10577804  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 17831635 - 17831574
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||||||||||| ||||| || |||||| || ||||  |||||||||||| |||||||||||    
T  17831635 aagcacggatacagacacagacaccggatacgacactgacacgccgacaccgctaataattt 17831574  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 48548072 - 48548040
Alignment:
Q  163 aagcacggatacggacacggataccggacacaa 195  Q
    ||||||||||||||||||||| |||||||||||    
T  48548072 aagcacggatacggacacggacaccggacacaa 48548040  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 22595959 - 22596010
Alignment:
Q  173 acggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| ||||| ||||||||||||||  ||||||||||||||||||||||||    
T  22595959 acggatacggacaccggacacaacactgacacgccgacacagctaataattt 22596010  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 20785569 - 20785508
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| |||| |||| ||||| | | ||| |||| |||||||||||    
T  20785569 aagcacggatacggacacggacaccgtacacgacacggatatgccaacaccgctaataattt 20785508  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 5970212 - 5970151
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||||| |||||||||||||| ||||||||  ||||| ||||| |||||||| |||||||||    
T  5970212 aagcacagatacggacacggacaccggacatgacacggacacgtcgacacagttaataattt 5970151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 7801255 - 7801199
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||||||||     ||||| |||||||||||||| ||||||||||    
T  7801255 aagcacggatacggacacggataccg-----aacactaacacgccgacacaactaataattt 7801199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 12868779 - 12868718
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||| |||||||||| |||| ||||||||| ||||  |||||||||||||| |||||||||    
T  12868779 aagcagggatacggactcggacaccggacacgacactgacacgccgacacagttaataattt 12868718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 7377929 - 7377995
Alignment:
Q  158 ttattaagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||| |||||||||||||||| | || ||||||||||||||  |||| ||||||| ||||| |||||    
T  7377929 ttatgaagcacggatacggacccagacaccggacacaacacagacaccccgacaccgctaaaaattt 7377995  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 3209332 - 3209397
Alignment:
Q  164 agcacggatacggacacggataccggacacaacacga-----acacgccgacacagctaataattt 224  Q
    |||||||||||  ||||||| ||||||||| ||||||     ||||||||||||||||||||||||    
T  3209332 agcacggatacaaacacggacaccggacacgacacgacacagacacgccgacacagctaataattt 3209397  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 15382426 - 15382493
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacg------aacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| ||||||||| |||||       ||||||||||||||||||||||||    
T  15382426 aagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataattt 15382493  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 34276806 - 34276841
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacac 198  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34276806 aagcacggatacggacacggataccggacacgacac 34276841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 13287509 - 13287468
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacac 204  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacac 13287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 20683330 - 20683366
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacg 199  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  20683330 aagcacggatacggacacggacaccggacacgacacg 20683366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 31084291 - 31084339
Alignment:
Q  176 gacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    |||| ||| ||||||||| ||||  ||||||||||||||||||||||||    
T  31084291 gacatggacaccggacacgacactgacacgccgacacagctaataattt 31084339  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 9778457 - 9778516
Alignment:
Q  163 aagcacggatacggacacggataccggacacaacacgaacacgccgacacagctaataattt 224  Q
    ||||||||||||||||||||| ||||||||| ||||| |||  | ||||||||| |||||||    
T  9778457 aagcacggatacggacacggacaccggacacgacacggaca--ctgacacagctgataattt 9778516  T

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