View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_83 (Length: 220)
Name: NF20076_low_83
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 7435986 - 7436176
Alignment:
| Q |
14 |
atgaaatgcatcttggaccggaagagaggttcaaccacgggcctaactacattgtcaaacacgatagtatgccgtaagatgagagatgcatcggcatgat |
113 |
Q |
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| T |
7435986 |
atgaaatacaacgtggactggaataggggttcaaccacgggcctaactacattgtccaacacgatagtatgccgtaagatgagagatgcatcagcatgat |
7436085 |
T |
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| Q |
114 |
cagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaataacattgaccatgaattacatgtagattc |
204 |
Q |
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| T |
7436086 |
cagaatgatttccttgtatgattcgattccggtagattttcatgaaataagggttttgaaataacattgaccatgatttacatgtagattc |
7436176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 7524875 - 7524986
Alignment:
| Q |
77 |
atagtatgccgtaagatgagagatgcatcggcatgatcagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaata |
176 |
Q |
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| T |
7524875 |
atagtatgccgtaaaatgagagatgcatcatcatagccagaatgatttctgtatatgatatggttgcggtacattttcatgaaataagagttttgaaata |
7524974 |
T |
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| Q |
177 |
acattgaccatg |
188 |
Q |
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| T |
7524975 |
acaatgaccatg |
7524986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 7519871 - 7519751
Alignment:
| Q |
78 |
tagtatgccgtaagatga-gagatgcatcggcatgatcagaatgatttccatgtatgatttgattccggtagattttcatgaaataagggttttgaaata |
176 |
Q |
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| T |
7519871 |
tagtatgccgtaagataaagagatgcatcatcttaatgagaatgatttccatgcatgatatgattgcagtagacgctcatgaaatagtggttttcaaata |
7519772 |
T |
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| Q |
177 |
acattgaccatgaattacatg |
197 |
Q |
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| T |
7519771 |
acattgaccgtgatttacatg |
7519751 |
T |
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