View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20076_low_88 (Length: 213)
Name: NF20076_low_88
Description: NF20076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20076_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 36466687 - 36466873
Alignment:
| Q |
16 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcctaaactttttaacttcagaaaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466687 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcctaaactttttaacttcagaaaca |
36466786 |
T |
|
| Q |
116 |
aggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagagtaaattagactcaattcagaattctctgctgc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36466787 |
aggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagagtaaattagactcaattcagaattcactgctgc |
36466873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 21190056 - 21189855
Alignment:
| Q |
16 |
ataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcct-aaactttttaacttcagaaac |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21190056 |
ataaaaacaccagctactaaaccagaacaggaactgctatcagtacatgaaattgctcatatagacttatatgctcctaaaactttttaacttcagaaac |
21189957 |
T |
|
| Q |
115 |
aaggatgatttttactacaagaaaacatatatcagttac--------------aagacaatatatcagagtaaattagactcaattcagaattctctgct |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
21189956 |
aaggataatttttactacaagaaaacatatatcagttacaagggtcaagagataagacaatatatcatagtaaattagactcaattcagaattcactgct |
21189857 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
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|| |
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|
| T |
21189856 |
gc |
21189855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 20625920 - 20625781
Alignment:
| Q |
18 |
aaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcct-aaactttttaacttcagaaacaa |
116 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||| |||||||| |||| ||||| ||| |||||||||||| |||||||||| || |||||||| |
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| T |
20625920 |
aaaaacaccaactattaaaccaaaacaggaactgccatcagtacatgacattggtcataaagatttatatgctcctaaaactttttaggttaagaaacaa |
20625821 |
T |
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| Q |
117 |
ggatgatttttactacaagaaaacatatatcagttacaag |
156 |
Q |
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||||||||||||||| ||||||| ||||| || ||||||| |
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| T |
20625820 |
ggatgatttttactaaaagaaaaaatataccatttacaag |
20625781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 30747452 - 30747404
Alignment:
| Q |
154 |
aagacaatatatcagagtaaattagactcaattcagaattctctgctgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30747452 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgc |
30747404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 30768903 - 30768855
Alignment:
| Q |
154 |
aagacaatatatcagagtaaattagactcaattcagaattctctgctgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30768903 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgc |
30768855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8697116 - 8697060
Alignment:
| Q |
18 |
aaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctca |
74 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||| ||| |||||| | |||||||| |
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| T |
8697116 |
aaaaacatcaactactaaaccagaacaggaactgccatcagtacataacattgctca |
8697060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 40568293 - 40568235
Alignment:
| Q |
98 |
tttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttacaag |
156 |
Q |
| |
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||||||| || ||||||||| ||||||||||||||||||||| ||||||| |||||||| |
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| T |
40568293 |
tttttaagttaagaaacaagaatgatttttactacaagaaaaaatatatccgttacaag |
40568235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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