View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20077_high_1 (Length: 694)
Name: NF20077_high_1
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20077_high_1 |
 | |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 11 - 681
Target Start/End: Original strand, 47634844 - 47635514
Alignment:
| Q |
11 |
cacagagactatcatcacatgcagactgttccttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
110 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47634844 |
cacagagactatcatcagatgcagactgctccttatccaaacaagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctc |
47634943 |
T |
|
| Q |
111 |
caccgtggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47634944 |
caccatggctacaaggcctggcgttttcatgatgaacagcctaaatatcacaaaccaggagacattcatgcctttgttgtttgatacaatgaacaaaaca |
47635043 |
T |
|
| Q |
211 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagaatctctggttttcagacactttattgtatggctcagtgta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47635044 |
gcagataatgctgcaaattcttctgttggtgctaagaaatacgcaacaaaggaagctagcatctctggttttcagacactttattgtatggctcagtgta |
47635143 |
T |
|
| Q |
311 |
cagaggatttatcacagcaagattgcagaacgtgtcttagtgctgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47635144 |
cagaggatttatcacagcaagattgcagaacgtgtcttagtgatgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtt |
47635243 |
T |
|
| Q |
411 |
tcctagctgtaatgttagatatgaattataccctttttatcgaaaccttgctccttcaccatcaccagcgccttcagcagcaccagcgcttgttcctcct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47635244 |
tcctagctgtaatgttagatatgaattataccctttttatcgaaaccttgctccttcaccatcaccagcgccttcagcagcaccagcgcttgttcctcct |
47635343 |
T |
|
| Q |
511 |
tcaaccagcactcctactttgggaggtaatataatttacgtttgtgataattttgatgaattctgaattttataataactacttgttagggtcacaatta |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635344 |
tcaaccagcactcctactttgggaggtaatataatttacgtttgtgataattttgatgaattctgaattttataataactacttgttagggtcacaatta |
47635443 |
T |
|
| Q |
611 |
tcgacctatttgactatttcacgtagatgcagaaaagtgtatgcataaaagagaataacaatgtactaaat |
681 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47635444 |
tcgatctatttgactatttcacgtagatgcagaaaagtgtatgcataaaagagaataacaatgtactaaat |
47635514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 8e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 278 - 461
Target Start/End: Complemental strand, 9674764 - 9674581
Alignment:
| Q |
278 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgtgtcttagtgctgctattggagctcttccacagtg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
9674764 |
gttttcagacactttattgtatggctcagtgtacagaggatttatcacagcaagattgcagaacgtgtcttagtgatgctattggagctcttccacagtg |
9674665 |
T |
|
| Q |
378 |
ttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttatcgaaaccttgc |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9674664 |
ttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttatcgaaaccttgc |
9674581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 20128262 - 20128155
Alignment:
| Q |
43 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
142 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
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|
| T |
20128262 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
20128163 |
T |
|
| Q |
143 |
tgaacagc |
150 |
Q |
| |
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|||||||| |
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|
| T |
20128162 |
tgaacagc |
20128155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 22204608 - 22204715
Alignment:
| Q |
43 |
ttatccaaacgagctgtaatctggtacgacgagtgcatggttcgatattccaacacctcttttttctccaccgtggctacaaggcctggcgttttcatga |
142 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||| || ||||| | ||||| ||||| || | |
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|
| T |
22204608 |
ttatccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccactgtttctacacgtcctggtgtttttataa |
22204707 |
T |
|
| Q |
143 |
tgaacagc |
150 |
Q |
| |
|
|||||||| |
|
|
| T |
22204708 |
tgaacagc |
22204715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 450
Target Start/End: Complemental strand, 20086216 - 20086142
Alignment:
| Q |
376 |
tgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
20086216 |
tgttgtgatggaaaggtgggtgggagagttctttttcctagctgtaatgttaggtatgaattatatcctttttat |
20086142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 450
Target Start/End: Original strand, 24385115 - 24385233
Alignment:
| Q |
331 |
gattgcagaacgtgtcttagtgctgctattggagctcttccacagtgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagat |
430 |
Q |
| |
|
||||||||||| ||||| | | |||||||| | ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||| |||| | |
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|
| T |
24385115 |
gattgcagaacctgtctcaatagtgctattgaatctcttccactatgttgtgatggaaagcagggt-ggagagttccttttcctagctgtaacattaggt |
24385213 |
T |
|
| Q |
431 |
atgaattataccctttttat |
450 |
Q |
| |
|
||||| ||| ||||||||| |
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|
| T |
24385214 |
atgaactatttcctttttat |
24385233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 450
Target Start/End: Original strand, 22204947 - 22205021
Alignment:
| Q |
376 |
tgttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||||||||||||||| |||| |||||| |||| ||||||||| |
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|
| T |
22204947 |
tgttgtgatggaaaggtgggtgcgagagttgtttttcctagctgtaatattaggtatgaactatatcctttttat |
22205021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 21972082 - 21972026
Alignment:
| Q |
394 |
ggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
||||||||| || | | |||||||||||||||||| ||||||||||| || |||||| |
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|
| T |
21972082 |
ggtgggagatttctttatcctagctgtaatgttaggtatgaattatatccattttat |
21972026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 47781 - 47850
Alignment:
| Q |
381 |
tgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
47781 |
tgatggaaagcagggtgggatggttttttttcctagctgtaatgttaggtatgaactatatcctttttat |
47850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 5299 - 5371
Alignment:
| Q |
378 |
ttgtgatggaaagcaaggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
||||||||||||| | |||||||||||| | ||||||||||||||| |||| |||||| |||| ||||||||| |
|
|
| T |
5299 |
ttgtgatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatcctttttat |
5371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 16147 - 16091
Alignment:
| Q |
394 |
ggtgggagagttttgtttcctagctgtaatgttagatatgaattataccctttttat |
450 |
Q |
| |
|
||||||||| || | || ||||||||||||||||| |||||| |||| ||||||||| |
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|
| T |
16147 |
ggtgggagatttcttttgcctagctgtaatgttaggtatgaactatatcctttttat |
16091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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