View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20077_high_2 (Length: 505)
Name: NF20077_high_2
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20077_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 6708711 - 6709187
Alignment:
| Q |
13 |
aatatcatagttgtattcattcaattgacacaaacaaaaggagtttatgtaggtcaacaacacctagctcaactaactaactacttataactaattacag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6708711 |
aatatcatagttgtattcattcaattgacacaaacaaaaggagtttatgtaggtcaacaacacctagctcaactaactaactacttataactaattacag |
6708810 |
T |
|
| Q |
113 |
aattagtttactagcttatctaagtaggagctaataccactgctaactaatcaaattgttttgggttttattctccgttttctaagaaaaacaagttcta |
212 |
Q |
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| T |
6708811 |
aattagtttactagcttatctaagtaggagctaataccactgctaactaatcaaattgttttgggttttattctccgttttctaagaaaaacaagttcta |
6708910 |
T |
|
| Q |
213 |
gtaattcagagtctggtcgtggggttagtgaagtctagtcaagagttgtttcaatcatgattcatattttagttctcccaaacgattcaactctaactga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6708911 |
gtaattcagagtctggtcgtggggttagtgaagtctagtcaagagttgtttcaatcatgattcatattttagttctcccaaacgattcaactctaactga |
6709010 |
T |
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| Q |
313 |
agctctttgtcnnnnnnnnnnnnnnnnnctctaactgaagctcattataacttgagtctgaccacttgattatacc--gtgccctctacagttccatgac |
410 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
6709011 |
agctctttgtc----aaaaaaaaaaaaactctaactgaagctcattataacttgagtctgaccacttgattataccgagtgcactctacagttccatgac |
6709106 |
T |
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| Q |
411 |
ttccatctttgttacttattcgtttaaattaaagttgaagttttcaacttgtagaggttgactttcaattgcccttgcttc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6709107 |
ttccatctttgttacttattcgtttaaattaaagttgaagttttcaacttgtagaggctgactttcaattgcccttgcttc |
6709187 |
T |
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