View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20077_high_3 (Length: 407)
Name: NF20077_high_3
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20077_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 30958503 - 30958893
Alignment:
| Q |
17 |
tgttcctaatattcgacttgcaggccctagatcctttgcacacattgttaaaacggccacggccaatgttgagcggagtggaggccaataccatcatgtt |
116 |
Q |
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| T |
30958503 |
tgttcctaatattcgacttgcaggccctagatcctttgcacacattgttaaaacggccacggccattgttgagcggagtggaggccaataccatcatgtt |
30958602 |
T |
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| Q |
117 |
ttgatgatacttgcaaatggtcaggtaaggtattctattatttatttatacagcataaagactcgattgcttcttaccgagttgtttctctctttaaatc |
216 |
Q |
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| T |
30958603 |
ttgatgatacttgcaaatggtcaggtaaggtattctattatttatttatacagcagaaagactcgattgcttcttaccgagttgtttctctctttaaatc |
30958702 |
T |
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| Q |
217 |
taacggtatctactactggagtactatactgcaactgtagaaagatccaagttcggatgttggtggtagaactaatcttaagaagttggtgcaggtaaca |
316 |
Q |
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| T |
30958703 |
taacggtatctactactgcagtactatactgcaactgtagaaagatccaagttcggatgttggtggtagaactaatcttaagaagttggcgcaggtaaca |
30958802 |
T |
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| Q |
317 |
agaactcgacatggaaggcttagtccacaagagnnnnnnncaatggatgccattgttgaggccaggtgattattctcaataataaatgttg |
407 |
Q |
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| T |
30958803 |
agaactcgacatggaaggcttagtccacaagagagaaaaacaatggatgccattgttgaggccaggtgattattctcaataataaatgttg |
30958893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 7473513 - 7473586
Alignment:
| Q |
37 |
caggccctagatcctttgcacacattgttaaaacggccacggccaatgttgagcggagtggaggccaataccat |
110 |
Q |
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| T |
7473513 |
caggccctacatcatttgcacccattgttgaaacggccatgacaattgttgagcagagtggaggccaataccat |
7473586 |
T |
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