View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20077_low_10 (Length: 239)
Name: NF20077_low_10
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20077_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 4506671 - 4506867
Alignment:
| Q |
19 |
aagaatggagcatgagtcccaaaaagccttggttcattcatgtttgataggttgatttgaaaactttggctatcactaccaccataaacattgtattcaa |
118 |
Q |
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| T |
4506671 |
aagaatggaacatgagtcc-aaaaagccttggttcattcatgtttgataggttaatttgaaaactctggctatcactaccaccataaacattgtattcaa |
4506769 |
T |
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| Q |
119 |
agaaaggcactagttcatgtgagttgaatttaagtaatggatgatcttctaattaaggaagagaaacgatggcgattaacaatggcaaatgtgagtgctt |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
4506770 |
agaaaggcactagttcatgtgaattgaatttaagtaatggatgatcttc----taaggaagagaaatgatgacgattaacaatggcaaatgtgagtgctt |
4506865 |
T |
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