View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20077_low_4 (Length: 387)

Name: NF20077_low_4
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20077_low_4
NF20077_low_4
[»] chr6 (20 HSPs)
chr6 (1-377)||(33057158-33057534)
chr6 (5-245)||(33644584-33644836)
chr6 (1-229)||(9166489-9166720)
chr6 (93-229)||(33285322-33285458)
chr6 (1-227)||(33304214-33304452)
chr6 (1-226)||(33262357-33262594)
chr6 (93-236)||(33387875-33388018)
chr6 (103-226)||(28870323-28870446)
chr6 (14-170)||(33271582-33271741)
chr6 (5-201)||(33398828-33399018)
chr6 (108-234)||(31562983-31563109)
chr6 (175-234)||(33358656-33358715)
chr6 (95-226)||(33409709-33409840)
chr6 (14-72)||(31562877-31562935)
chr6 (16-66)||(33358799-33358849)
chr6 (1-76)||(33388047-33388122)
chr6 (1-76)||(33409865-33409940)
chr6 (1-65)||(33285501-33285565)
chr6 (1-66)||(28870209-28870274)
chr6 (94-135)||(33358714-33358755)
[»] chr2 (1 HSPs)
chr2 (1-234)||(17440920-17441147)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-234)||(367-612)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-234)||(6113-6358)
[»] chr4 (8 HSPs)
chr4 (93-234)||(31499199-31499340)
chr4 (94-226)||(31472695-31472827)
chr4 (95-226)||(31479154-31479285)
chr4 (1-146)||(31148108-31148256)
chr4 (1-76)||(31479048-31479123)
chr4 (98-229)||(31156951-31157082)
chr4 (37-79)||(31504269-31504311)
chr4 (1-73)||(31157122-31157194)


Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33057534 - 33057158
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  33057534 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttcctcttctgagattcaaa 33057435  T
Q  101 tagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  33057434 tagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaa 33057335  T
Q  201 taatatcattggtattgtatgttgtgcagcatttacgacggcaccctatcgtgaaagtttttgttcgtcgaagttgatgtatctggctttcaagcgtatt 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||||||||    
T  33057334 taatatcattggtattgtatgttgtgcagcatttacgatggcaccctatcgtgaaattttttattcctcggagttgatgaatctggctttcaagcgtatt 33057235  T
Q  301 gattccaatgagaggttgttgaatatgagagttccagtaaatctcagtcttgttaccaccaaatcaagtcacctatg 377  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  33057234 gattccaatgagaggttgttgaaaatgagagttccagtaaagctcagtcttgttacgaccaaatcaagtcacctatg 33057158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 33644584 - 33644836
Alignment:
Q  5 caaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgtt------------actcttatga 92  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||  |            ||| | ||      
T  33644584 caaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgatag 33644683  T
Q  93 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 192  Q
    || |||||| || | |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||||   |||||||||| |||||||    
T  33644684 gactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgac 33644783  T
Q  193 aatgacaataatatcattggtattgtatgttgtgcagcatttacgacggcacc 245  Q
    ||| ||||||||||||||||  ||||||||||||||| |||||| | ||||||    
T  33644784 aataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc 33644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9166720 - 9166489
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgtt---actcttatgagattc 97  Q
    |||||| ||||| |||| | |||||||||||| ||||||||| ||| ||||||||  ||||| ||| ||||||||||||  |   ||| | ||  |||||    
T  9166720 tgtccagaattgagtgataaggaacattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccaccatcccactttgataggattc 9166621  T
Q  98 aaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatga 197  Q
    |||| ||||  ||||||| |||||||||||||||||||||||||| |||  ||| |  ||| |||||||||||||   ||||||||| |||||||||| |    
T  9166620 aaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataa 9166521  T
Q  198 caataatatcattggtattgtatgttgtgcag 229  Q
    |||||||||||||||  |||||||||||||||    
T  9166520 caataatatcattggctttgtatgttgtgcag 9166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 33285458 - 33285322
Alignment:
Q  93 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 192  Q
    |||||| || |||| ||||||||||||||||||||||||||| || ||||||||  |||||  |||||||||||||||| | |||||||||| |||||||    
T  33285458 gattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgac 33285359  T
Q  193 aatgacaataatatcattggtattgtatgttgtgcag 229  Q
    ||| ||||||||||||||||  |||||||||||||||    
T  33285358 aataacaataatatcattggctttgtatgttgtgcag 33285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33304452 - 33304214
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttact----------ctt-- 88  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||| |||| ||| |||||||||| |||||||| |||  | ||          |||      
T  33304452 tgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggcaaactcacaatcctaccctacgtcctttg 33304353  T
Q  89 atgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 188  Q
    ||  ||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||  ||||| ||||||||| ||||||||| |||||||||| |||    
T  33304352 attggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgca 33304253  T
Q  189 tgacaatgacaataatatcattggtattgtatgttgtgc 227  Q
    ||||||| ||||| ||||||||||  || ||||||||||    
T  33304252 tgacaataacaattatatcattggctttctatgttgtgc 33304214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33262594 - 33262357
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttact------cttat---- 90  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||| ||||| || |||||||||| | ||| ||| ||  | ||      |||||        
T  33262594 tgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttgg 33262495  T
Q  91 --gagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 188  Q
      ||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||   ||||||||| |||    
T  33262494 atgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgca 33262395  T
Q  189 tgacaatgacaataatatcattggtattgtatgttgtg 226  Q
    ||| ||| ||||||||||||||||  || |||||||||    
T  33262394 tgataataacaataatatcattggctttctatgttgtg 33262357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 33388018 - 33387875
Alignment:
Q  93 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 192  Q
    ||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||   |  ||||||| |||||||    
T  33388018 gattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgac 33387919  T
Q  193 aatgacaataatatcattggtattgtatgttgtgcagcatttac 236  Q
    ||| ||||||||||||||||  || |||||||||||| ||||||    
T  33387918 aataacaataatatcattggctttctatgttgtgcagtatttac 33387875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 28870323 - 28870446
Alignment:
Q  103 gttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaata 202  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||| |||||||   ||||||||||   |||||||| ||||||    
T  28870323 gttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaata 28870422  T
Q  203 atatcattggtattgtatgttgtg 226  Q
    ||||||||||  ||||||||||||    
T  28870423 atatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 33271741 - 33271582
Alignment:
Q  14 gtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactctt---atgagattcaaatagttaatcc 110  Q
    |||||||||||| |||||| ||| ||||| ||| |||||||| ||||||||||| ||||||||| |  |  | ||   ||||| |||| ||  | | |||    
T  33271741 gtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatggcaaacccgcaatcttatttgaatgagtttcatattataactcc 33271642  T
Q  111 aggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaataga 170  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  33271641 aggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga 33271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 33399018 - 33398828
Alignment:
Q  5 caaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaatagt 104  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||||||||||  ||| || ||||  | | | | |      ||||| ||    
T  33399018 caaaattgggtgagagggaacgttgcagtagcatgacattttcatggatgatacaattcattctggccaatccacaatccacctct------caaattgt 33398925  T
Q  105 taatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaat 201  Q
    || ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||| ||||||||  ||||||  || |||||| ||| |||||    
T  33398924 tattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataataacaat 33398828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 31562983 - 31563109
Alignment:
Q  108 tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaataatatc 207  Q
    |||||||||||||||||| | ||||||||||||||| || |||||| ||||||||||||||||    ||||||  || ||||||||||  |||| |||||    
T  31562983 tccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatc 31563082  T
Q  208 attggtattgtatgttgtgcagcattt 234  Q
    |||||  ||||||||||||||| ||||    
T  31563083 attggctttgtatgttgtgcagtattt 31563109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 33358715 - 33358656
Alignment:
Q  175 tctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcattt 234  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  33358715 tctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 33358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 33409840 - 33409709
Alignment:
Q  95 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 194  Q
    ||||||| || | |||||||||||||||||||||||||||||||||||||||  |||||  ||||||| |||| ||    |||||| |||   |||||||    
T  33409840 ttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaa 33409741  T
Q  195 tgacaataatatcattggtattgtatgttgtg 226  Q
    | |||||||||| |||||  ||||| ||||||    
T  33409740 taacaataatattattggctttgtaagttgtg 33409709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 31562877 - 31562935
Alignment:
Q  14 gtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggca 72  Q
    |||||||||| |||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  31562877 gtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggca 31562935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 33358849 - 33358799
Alignment:
Q  16 gagagggaacattgcaggagcatgacacttttatggatgaaacaattcatt 66  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  33358849 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcatt 33358799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33388122 - 33388047
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc 76  Q
    ||||||||| ||||||| |||||   |||||| ||||||||| ||| |||||||| |||||| |||||||||||||    
T  33388122 tgtccaaaactgggtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaacc 33388047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33409940 - 33409865
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc 76  Q
    ||||||||||||| ||||||||||| |||||| ||||| ||| ||| |||||||  ||| |||||| |||||||||    
T  33409940 tgtccaaaattggttgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggcaaacc 33409865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33285565 - 33285501
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcat 65  Q
    ||||||||||| ||||| ||||||| |||||| |||||| || ||| |||||||| |||||||||    
T  33285565 tgtccaaaattaggtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcat 33285501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28870209 - 28870274
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcatt 66  Q
    |||||||| || ||||||||||||| |||  | |||||| || ||| |||||||||||||||||||    
T  28870209 tgtccaaatttaggtgagagggaacgttgttgtagcatggcattttcatggatgaaacaattcatt 28870274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 33358755 - 33358714
Alignment:
Q  94 attcaaatagttaatccaggaagtgaaataccaagttggatc 135  Q
    ||||||||||||| ||||||||||||||| | ||||||||||    
T  33358755 attcaaatagttactccaggaagtgaaatgctaagttggatc 33358714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 17440920 - 17441147
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatgagattcaaa 100  Q
    ||||||||||||||||||||||||  || ||| ||||||||| ||| ||||||||  ||||||||||||||||||||    || |   ||  |||||| |    
T  17440920 tgtccaaaattgggtgagagggaatgttacagtagcatgacattttcatggatgatgcaattcattaaggcaaaccctttctatttgaataggattcata 17441019  T
Q  101 tagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatgacaa 200  Q
    | |||| ||||||||| |||||||||||||||||||||||| ||||  ||||| ||||||||  ||||||||  |||||||||| ||      |||||||    
T  17441020 ttgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagc------atgacaa 17441113  T
Q  201 taatatcattggtattgtatgttgtgcagcattt 234  Q
    ||||||||||||| ||||||||||||||| ||||    
T  17441114 taatatcattggttttgtatgttgtgcagtattt 17441147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 612 - 367
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccac---------gt---tactctt 88  Q
    ||||||||||||||||||||||||  ||| || ||||| ||| ||| ||||||||||||||||||| ||||||||| ||         ||   || |  |    
T  612 tgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgt 513  T
Q  89 atgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 188  Q
    ||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  ||    
T  512 atgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttataca 413  T
Q  189 tgacaatgacaataatatcattggtattgtatgttgtgcagcattt 234  Q
    ||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  412 tgacaataagaataatatcattggctttgtattttgtgcagtattt 367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6358 - 6113
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccac---------gt---tactctt 88  Q
    ||||||||||||||||||||||||  ||| || ||||| ||| ||| ||||||||||||||||||| ||||||||| ||         ||   || |  |    
T  6358 tgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgt 6259  T
Q  89 atgagattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggca 188  Q
    ||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||| |||||||   |||||| |||  ||    
T  6258 atgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttataca 6159  T
Q  189 tgacaatgacaataatatcattggtattgtatgttgtgcagcattt 234  Q
    ||||||| | ||||||||||||||  |||||| |||||||| ||||    
T  6158 tgacaataagaataatatcattggctttgtattttgtgcagtattt 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 31499199 - 31499340
Alignment:
Q  93 gattcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgac 192  Q
    |||||| || |||| |||||||||||||||| |||||||| | || |||||||| | |||| ||||||||| |||||||   ||||| ||||  ||||||    
T  31499199 gattcatattgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgac 31499298  T
Q  193 aatgacaataatatcattggtattgtatgttgtgcagcattt 234  Q
    ||| ||||||||||||||||  ||||||||||||||| ||||    
T  31499299 aataacaataatatcattggctttgtatgttgtgcagtattt 31499340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 31472695 - 31472827
Alignment:
Q  94 attcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgaca 193  Q
    ||||| || |||| ||||||||||||||||||||||||| ||||||||||||  | |||| |||| |||| | |||||   ||||| |||| ||||||||    
T  31472695 attcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgaca 31472794  T
Q  194 atgacaataatatcattggtattgtatgttgtg 226  Q
    || |||||||||||||||||  | |||||||||    
T  31472795 ataacaataatatcattggttgtatatgttgtg 31472827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 31479154 - 31479285
Alignment:
Q  95 ttcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaa 194  Q
    ||||||| |||| |||||| |||||||| ||||||||| ||||||||||||| | |||| ||| ||||| ||||||    ||||| |||| ||| |||||    
T  31479154 ttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaa 31479253  T
Q  195 tgacaataatatcattggtattgtatgttgtg 226  Q
    | ||||||||||| ||||   |||||||||||    
T  31479254 taacaataatatcgttggctgtgtatgttgtg 31479285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 31148256 - 31148108
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacgttactcttatga---gattc 97  Q
    ||||| ||||||||||||||||||  ||| |  ||||||| | ||| |||||||| |||| |||||  ||| |||||||  | ||| | |||   |||||    
T  31148256 tgtcctaaattgggtgagagggaatgttggaatagcatgatattttcatggatgatacaactcattcgggcgaacccacaatcctcatctgatgtgattc 31148157  T
Q  98 aaatagttaatccaggaagtgaaataccaagttggatcaacaatcagag 146  Q
    |||| |||| ||| ||||||||||||||||||||| |||||||||||||    
T  31148156 aaattgttactccgggaagtgaaataccaagttggttcaacaatcagag 31148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31479048 - 31479123
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc 76  Q
    ||||| ||||||||||| | ||||| ||| || ||||||||| ||| |||||||| |||||||||| |||||||||    
T  31479048 tgtcctaaattgggtgaaacggaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaacc 31479123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 31157082 - 31156951
Alignment:
Q  98 aaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaataccaatagaccggtctcctattaggcatgacaatga 197  Q
    |||| |||| ||| |||||||||||||||| |||| |||||||||||||   |||| ||||||||  ||| ||||  ||||  |||| | |  |||||||    
T  31157082 aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga 31156983  T
Q  198 caataatatcattggtattgtatgttgtgcag 229  Q
    |||| || ||||||| ||||  ||||||||||    
T  31156982 caatgatttcattggcattgcttgttgtgcag 31156951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 31504269 - 31504311
Alignment:
Q  37 atgacacttttatggatgaaacaattcattaaggcaaacccac 79  Q
    |||||| ||| |||||||| |||||||||||||||||||||||    
T  31504269 atgacattttcatggatgatacaattcattaaggcaaacccac 31504311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31157194 - 31157122
Alignment:
Q  1 tgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaa 73  Q
    ||||| |||||||||||||| ||| ||||||  |||||| || ||| |||||||| |||||| ||| ||||||    
T  31157194 tgtcctaaattgggtgagagtgaagattgcaatagcatggcattttcatggatgatacaattgattcaggcaa 31157122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University