View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20077_low_7 (Length: 312)
Name: NF20077_low_7
Description: NF20077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20077_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 34640256 - 34640544
Alignment:
| Q |
18 |
cagaggtatctaaaatgatccaattttggtatgtgatacaagtataatacaagtaaaataaagaagcaattaatatcattttggaacaatacaannnnnn |
117 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640256 |
cagaggcatctaaaatgatccaattttggtatgtaatacaagtataatacaagtaaaataaagaagcaattaatatcattttggaacaatacaatttttt |
34640355 |
T |
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| Q |
118 |
nngagtaaattatctaaaatgaaatcagttttttggtctacaaaggaacatttcagtaatatgggtg--------ccgtttatagtagaatgtatcaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34640356 |
taaagtaaattatctaaaatgaaatcagttttttggtctacaaaggaacatttcagtaatatgggttgggatacaccgtttatagtagaatgtatcaaat |
34640455 |
T |
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| Q |
210 |
attcgatctctatgctactgaaattctaagttccccaacaaattaaactacaaatatttgtttacaaaaagatcactactatttcgata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34640456 |
attcgatctctatgctactgaaattctaagttccccaacaaattaaactacaaatatttgtttacaaaaagatcactactatttcgata |
34640544 |
T |
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