View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_high_1 (Length: 636)

Name: NF20078_high_1
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_high_1
NF20078_high_1
[»] chr8 (29 HSPs)
chr8 (17-218)||(30755799-30755995)
chr8 (392-525)||(30755444-30755567)
chr8 (20-145)||(31117258-31117385)
chr8 (537-606)||(37397138-37397207)
chr8 (537-597)||(9623503-9623563)
chr8 (532-596)||(33726696-33726760)
chr8 (537-597)||(24473761-24473821)
chr8 (537-604)||(2856520-2856587)
chr8 (537-596)||(25438794-25438853)
chr8 (537-595)||(34498125-34498183)
chr8 (537-602)||(34498548-34498613)
chr8 (549-597)||(6199101-6199149)
chr8 (537-597)||(20861631-20861691)
chr8 (236-288)||(21406233-21406285)
chr8 (236-288)||(21800725-21800777)
chr8 (549-597)||(24473344-24473392)
chr8 (537-597)||(37396709-37396769)
chr8 (236-288)||(38135664-38135716)
chr8 (537-604)||(15444640-15444707)
chr8 (537-595)||(25439119-25439176)
chr8 (549-597)||(16169175-16169222)
chr8 (236-288)||(21835234-21835286)
chr8 (549-597)||(41662522-41662570)
chr8 (537-606)||(6198650-6198719)
chr8 (273-328)||(30755631-30755683)
chr8 (549-597)||(9623887-9623934)
chr8 (549-597)||(12281125-12281173)
chr8 (236-288)||(38134328-38134380)
chr8 (549-597)||(41662408-41662456)
[»] chr6 (20 HSPs)
chr6 (392-525)||(14011899-14012035)
chr6 (392-525)||(17597123-17597259)
chr6 (226-290)||(17596897-17596961)
chr6 (479-525)||(14012065-14012111)
chr6 (270-316)||(14012343-14012389)
chr6 (265-328)||(14011771-14011835)
chr6 (270-328)||(17597000-17597059)
chr6 (549-595)||(32734001-32734047)
chr6 (537-597)||(7654541-7654601)
chr6 (537-597)||(10087851-10087911)
chr6 (537-597)||(33974292-33974352)
chr6 (272-314)||(17597494-17597536)
chr6 (247-288)||(35241890-35241931)
chr6 (537-577)||(29074365-29074405)
chr6 (537-577)||(29079129-29079169)
chr6 (537-577)||(29106938-29106978)
chr6 (549-603)||(13579656-13579709)
chr6 (549-597)||(18242161-18242209)
chr6 (537-597)||(22684351-22684410)
chr6 (537-597)||(22754658-22754717)
[»] chr2 (34 HSPs)
chr2 (395-525)||(14456686-14456809)
chr2 (265-328)||(14456556-14456619)
chr2 (236-289)||(958662-958715)
chr2 (537-597)||(7664666-7664726)
chr2 (537-597)||(17850979-17851039)
chr2 (537-597)||(37720205-37720265)
chr2 (27-79)||(42341535-42341587)
chr2 (549-604)||(5378655-5378710)
chr2 (537-595)||(8851151-8851209)
chr2 (545-603)||(41790913-41790971)
chr2 (160-206)||(42341017-42341063)
chr2 (226-279)||(14456458-14456511)
chr2 (537-597)||(7979996-7980055)
chr2 (537-597)||(8851575-8851635)
chr2 (268-316)||(19694269-19694317)
chr2 (537-596)||(19141446-19141504)
chr2 (236-290)||(19694204-19694258)
chr2 (537-595)||(26692399-26692457)
chr2 (537-595)||(26692813-26692871)
chr2 (537-602)||(16911262-16911326)
chr2 (549-597)||(5379964-5380012)
chr2 (537-597)||(7664249-7664309)
chr2 (537-597)||(16910828-16910888)
chr2 (537-597)||(17851395-17851455)
chr2 (236-288)||(42177269-42177321)
chr2 (549-596)||(6325352-6325399)
chr2 (238-285)||(42176049-42176096)
chr2 (537-595)||(5793450-5793508)
chr2 (549-591)||(6324924-6324966)
chr2 (537-602)||(18750119-18750183)
chr2 (549-577)||(19141854-19141882)
chr2 (549-597)||(20347469-20347517)
chr2 (549-597)||(30190924-30190972)
chr2 (549-597)||(38490846-38490893)
[»] chr7 (38 HSPs)
chr7 (392-525)||(40140864-40140990)
chr7 (537-606)||(37972389-37972458)
chr7 (537-597)||(9035286-9035346)
chr7 (537-597)||(10533035-10533095)
chr7 (537-597)||(37888834-37888894)
chr7 (537-597)||(37889252-37889312)
chr7 (537-604)||(20418882-20418949)
chr7 (236-290)||(45350873-45350927)
chr7 (537-597)||(16198970-16199030)
chr7 (537-597)||(17156968-17157028)
chr7 (537-597)||(20419317-20419377)
chr7 (537-597)||(22740157-22740217)
chr7 (549-597)||(29292923-29292971)
chr7 (271-314)||(40141222-40141265)
chr7 (537-595)||(18863970-18864028)
chr7 (537-595)||(36527387-36527444)
chr7 (537-597)||(3204670-3204728)
chr7 (549-597)||(3205098-3205146)
chr7 (537-597)||(13741558-13741618)
chr7 (537-597)||(13744226-13744285)
chr7 (544-604)||(23686717-23686777)
chr7 (549-597)||(29293351-29293399)
chr7 (537-597)||(37971961-37972021)
chr7 (236-288)||(40142716-40142768)
chr7 (238-290)||(45351730-45351782)
chr7 (537-597)||(48359321-48359380)
chr7 (537-603)||(9034862-9034929)
chr7 (265-316)||(27919087-27919138)
chr7 (537-595)||(22740584-22740641)
chr7 (238-288)||(42025140-42025190)
chr7 (549-602)||(9412330-9412383)
chr7 (549-594)||(48359663-48359707)
chr7 (549-597)||(3687661-3687709)
chr7 (549-577)||(18864407-18864435)
chr7 (268-316)||(27919547-27919594)
chr7 (549-597)||(36527803-36527851)
chr7 (549-597)||(38826918-38826966)
chr7 (537-597)||(42418592-42418652)
[»] chr1 (49 HSPs)
chr1 (537-597)||(13918447-13918507)
chr1 (537-593)||(32162734-32162790)
chr1 (537-597)||(46824271-46824331)
chr1 (537-596)||(50526465-50526524)
chr1 (549-603)||(6703455-6703509)
chr1 (537-597)||(4692426-4692486)
chr1 (537-597)||(9347127-9347187)
chr1 (549-597)||(13918872-13918920)
chr1 (537-577)||(19007755-19007795)
chr1 (537-597)||(20480605-20480664)
chr1 (537-597)||(26814695-26814755)
chr1 (537-597)||(32163036-32163096)
chr1 (537-595)||(44911430-44911488)
chr1 (537-595)||(50430074-50430132)
chr1 (544-597)||(50615241-50615294)
chr1 (544-597)||(50623069-50623122)
chr1 (537-597)||(27172117-27172176)
chr1 (236-288)||(46043472-46043524)
chr1 (537-597)||(48105109-48105169)
chr1 (268-328)||(50036879-50036938)
chr1 (227-290)||(1167519-1167582)
chr1 (537-604)||(19008743-19008810)
chr1 (537-595)||(28634150-28634208)
chr1 (549-595)||(46823846-46823892)
chr1 (537-595)||(48104681-48104739)
chr1 (232-290)||(48815210-48815268)
chr1 (537-597)||(20371345-20371405)
chr1 (537-597)||(6703887-6703947)
chr1 (537-597)||(20480169-20480228)
chr1 (537-597)||(26815112-26815172)
chr1 (537-597)||(28633721-28633781)
chr1 (537-597)||(50615614-50615673)
chr1 (537-597)||(50623442-50623501)
chr1 (542-597)||(39690795-39690850)
chr1 (233-279)||(15549823-15549869)
chr1 (549-595)||(42611188-42611234)
chr1 (549-595)||(50949164-50949210)
chr1 (549-602)||(44911021-44911074)
chr1 (549-597)||(999530-999577)
chr1 (537-597)||(4692023-4692082)
chr1 (549-597)||(8108998-8109046)
chr1 (537-577)||(9347544-9347584)
chr1 (537-597)||(21687026-21687086)
chr1 (549-597)||(27172546-27172594)
chr1 (549-597)||(39692005-39692053)
chr1 (549-597)||(41082910-41082958)
chr1 (549-597)||(47955307-47955355)
chr1 (549-597)||(49317753-49317800)
chr1 (549-577)||(49318171-49318199)
[»] chr3 (29 HSPs)
chr3 (537-603)||(27238460-27238526)
chr3 (537-597)||(10348792-10348852)
chr3 (537-597)||(42455791-42455851)
chr3 (537-595)||(53766166-53766224)
chr3 (537-597)||(24485453-24485512)
chr3 (537-597)||(48159898-48159958)
chr3 (537-585)||(24485034-24485082)
chr3 (537-597)||(40848954-40849014)
chr3 (537-597)||(42672979-42673038)
chr3 (537-597)||(48160326-48160386)
chr3 (537-597)||(53687889-53687949)
chr3 (537-597)||(53766572-53766632)
chr3 (549-604)||(47665905-47665960)
chr3 (549-595)||(26007624-26007670)
chr3 (537-595)||(27238893-27238951)
chr3 (537-597)||(3353129-3353188)
chr3 (537-597)||(36180983-36181043)
chr3 (537-597)||(40848522-40848581)
chr3 (537-597)||(42673289-42673348)
chr3 (549-597)||(44008406-44008453)
chr3 (549-597)||(47666340-47666388)
chr3 (549-597)||(53688308-53688355)
chr3 (537-596)||(22429589-22429647)
chr3 (537-598)||(22429158-22429219)
chr3 (530-558)||(3353508-3353536)
chr3 (549-577)||(3353556-3353584)
chr3 (549-597)||(20969024-20969072)
chr3 (537-577)||(26007202-26007242)
chr3 (530-558)||(42456152-42456180)
[»] chr5 (34 HSPs)
chr5 (537-606)||(12498559-12498628)
chr5 (537-597)||(10098520-10098580)
chr5 (537-597)||(12498921-12498981)
chr5 (537-597)||(26571157-26571217)
chr5 (549-595)||(2817152-2817198)
chr5 (236-290)||(13707389-13707443)
chr5 (537-595)||(21207229-21207287)
chr5 (236-290)||(39742541-39742595)
chr5 (537-597)||(19514956-19515016)
chr5 (537-597)||(25940522-25940582)
chr5 (238-290)||(29430631-29430683)
chr5 (549-597)||(34147515-34147563)
chr5 (236-291)||(25983368-25983423)
chr5 (537-595)||(10098934-10098991)
chr5 (270-316)||(13707899-13707945)
chr5 (537-599)||(22729433-22729494)
chr5 (236-290)||(42098269-42098323)
chr5 (537-597)||(3888240-3888300)
chr5 (549-605)||(16466747-16466803)
chr5 (537-577)||(19514547-19514587)
chr5 (537-597)||(26570730-26570790)
chr5 (537-597)||(37610203-37610262)
chr5 (537-597)||(37780321-37780380)
chr5 (549-604)||(25941019-25941074)
chr5 (265-316)||(29430076-29430127)
chr5 (537-584)||(41072207-41072254)
chr5 (549-604)||(43464197-43464251)
chr5 (537-595)||(3888655-3888713)
chr5 (549-595)||(11316717-11316763)
chr5 (537-575)||(43463778-43463816)
chr5 (549-597)||(26020451-26020499)
chr5 (530-558)||(37610575-37610603)
chr5 (549-597)||(37780747-37780795)
chr5 (238-290)||(42099135-42099187)
[»] scaffold0017 (1 HSPs)
scaffold0017 (537-597)||(185267-185327)
[»] chr4 (32 HSPs)
chr4 (537-597)||(4239359-4239419)
chr4 (537-597)||(9380308-9380368)
chr4 (537-606)||(39744458-39744527)
chr4 (537-597)||(293210-293270)
chr4 (537-597)||(25161879-25161939)
chr4 (537-597)||(28196766-28196826)
chr4 (537-597)||(32703643-32703703)
chr4 (537-604)||(9023238-9023305)
chr4 (537-598)||(43292037-43292098)
chr4 (537-597)||(9023673-9023733)
chr4 (549-597)||(9380746-9380794)
chr4 (537-597)||(23540245-23540305)
chr4 (537-597)||(28196347-28196407)
chr4 (551-597)||(39744031-39744077)
chr4 (549-597)||(169014-169063)
chr4 (537-597)||(23539842-23539900)
chr4 (537-597)||(169432-169492)
chr4 (549-597)||(292783-292831)
chr4 (236-288)||(17343457-17343509)
chr4 (549-597)||(26207751-26207799)
chr4 (537-577)||(48406378-48406418)
chr4 (231-288)||(19994344-19994401)
chr4 (549-597)||(39086628-39086676)
chr4 (544-597)||(54508816-54508869)
chr4 (247-279)||(19993019-19993051)
chr4 (549-597)||(24775788-24775836)
chr4 (549-577)||(26207381-26207409)
chr4 (553-597)||(32703226-32703270)
chr4 (549-597)||(43292362-43292410)
chr4 (549-577)||(44468928-44468956)
chr4 (537-597)||(48405963-48406022)
chr4 (549-597)||(56505694-56505742)
[»] scaffold0041 (1 HSPs)
scaffold0041 (539-597)||(38690-38748)
[»] scaffold0029 (2 HSPs)
scaffold0029 (551-597)||(9906-9952)
scaffold0029 (532-597)||(10307-10370)
[»] scaffold0460 (2 HSPs)
scaffold0460 (549-597)||(768-815)
scaffold0460 (549-597)||(331-379)
[»] scaffold0176 (2 HSPs)
scaffold0176 (537-597)||(20036-20096)
scaffold0176 (537-575)||(19643-19681)
[»] scaffold0069 (1 HSPs)
scaffold0069 (537-597)||(50499-50559)
[»] scaffold1500 (1 HSPs)
scaffold1500 (236-288)||(814-866)
[»] scaffold0802 (1 HSPs)
scaffold0802 (549-597)||(1425-1473)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 30755995 - 30755799
Alignment:
Q  17 aatatggatgggaataattaatcaaaataaaaatactaaaaattaagggtagaccccttcttatatcnnnnnnngaaagaaaagagtaacaccttcagac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  30755995 aatatggatgggaataattaatcaaaataaaaatactaaaaattaagggtagaccccttcttatatcaaaaatagaaagaaaagagtaacaccttcagac 30755896  T
Q  117 ttgtgtgggtcaaatcagagattggttggtttggaaggtatacttcttttaattatcttttactccacggtacaatatactactactcatacattatgag 216  Q
    |||||||||||||||||||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30755895 ttgtgtgggtcaaatcagagattggttgg-----aagatatacttcttttaattatcttttactccacggtacaatatactactactcatacattatgag 30755801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 392 - 525
Target Start/End: Complemental strand, 30755567 - 30755444
Alignment:
Q  392 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaagaggaagtacaaagaattacaaagaatcaattagaagcagttacaaa 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||| ||||    
T  30755567 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaacaggaagtacaaa----------gaatcaattagaagcagtttcaaa 30755478  T
Q  492 tggaaacgcaataattagaagcaatttctatgaa 525  Q
    ||||||||||||||||||||||||||||||||||    
T  30755477 tggaaacgcaataattagaagcaatttctatgaa 30755444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 31117258 - 31117385
Alignment:
Q  20 atggatgggaataattaatcaaaataaaaatactaaaaattaagggtagaccccttcttatatcnnnnnnngaaagaaaagagta-acaccttcagac-t 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||| |||||||||| || |||| |||| |    
T  31117258 atggatgggaataattaatcaaaataaaaatactaaaaattaaggatagaccccttcttatatcaaaaaaagaatgaaaagagtagacccctttagactt 31117357  T
Q  118 tgtgtgggtcaaatcagagattggttgg 145  Q
    |||| |||||| ||||||||||||||||    
T  31117358 tgtgagggtcagatcagagattggttgg 31117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 37397138 - 37397207
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaatt 606  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||||||||||||||||  |||||||    
T  37397138 aaactatggggggcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagccaaaaaatt 37397207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 9623563 - 9623503
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9623563 aaactatggggtgcaaaatcgcacaattggcaaactatagtgagaaaaagtgcaattaagc 9623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 596
Target Start/End: Complemental strand, 33726760 - 33726696
Alignment:
Q  532 gggggaaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  33726760 ggggaaaactataggaggcaaaatcgcacaattggtaaactatagggggaaaaagtgcaattaag 33726696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 24473761 - 24473821
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  24473761 aaactatggggtgcaaaatcgcacaattggcaaactatagggatgaaaagtgcaattaagc 24473821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 604
Target Start/End: Complemental strand, 2856587 - 2856520
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||| ||| ||||||||||||||||||||||||||||| || |||| | ||||||||| ||||||    
T  2856587 aaactatggggtgcaaaatcgcacaattggcaaactatagggaggaaaattacaattaagcctaaaaa 2856520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 25438853 - 25438794
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  25438853 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaag 25438794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 34498183 - 34498125
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  ||||||||||||||||    
T  34498183 aaactatggggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaa 34498125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 34498548 - 34498613
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaa 602  Q
    ||||||| ||| |||||||||||||||| ||||||||||||  | |||||||||||||||| ||||    
T  34498548 aaactatggggtgcaaaatcgcacaatttgcaaactataggggggaaaagtgcaattaagcctaaa 34498613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 6199101 - 6199149
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  6199101 gcaaaatcgcacaattggcaaactatagggaagaaaagtgcaattaagc 6199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 20861631 - 20861691
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||| ||||||||  |||||| |||||||||||    
T  20861631 aaactatggggtgcaaaatcgcacaattggcagactatagggggaaaaaatgcaattaagc 20861691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 21406233 - 21406285
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | |||||||||||||||||||||||||||||||||  |||||||    
T  21406233 agaaacactagtaaaataccaaaatatcccctctgcagttaactgccgaggaa 21406285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 21800725 - 21800777
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | |||||||||||||||||||||||||||||||||  |||||||    
T  21800725 agaaacactagtaaaataccaaaatatcccctctgcagttaactgccgaggaa 21800777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 24473392 - 24473344
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  24473392 gcaaaatcacacaattggcaaactatagggggaaaaagtgcaattaagc 24473344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37396769 - 37396709
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||| |||||||||||||  | ||||||||||||||||    
T  37396769 aaactatggggtgcaaaatcgcacaatcggcaaactataggggggaaaagtgcaattaagc 37396709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 38135716 - 38135664
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||||| ||||||| |||||||||||||||||||||||||  |||||||    
T  38135716 agaaacaccagtaaaatatcaaaatatcccctctgcagttaactgccgaggaa 38135664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 604
Target Start/End: Original strand, 15444640 - 15444707
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||| ||| |||||||||||||||||| ||| ||||||  |||||||||||||||| | ||||||    
T  15444640 aaactatggggtgcaaaatcgcacaattggtaaattatagggggaaaaagtgcaattaaacctaaaaa 15444707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 25439119 - 25439176
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  ||||||||||||||||    
T  25439119 aaactatggggtgcaaaatcgcacaattgacaaactatagg-ggaaaaagtgcaattaa 25439176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 16169222 - 16169175
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  16169222 gcaaaattgcacaattggcaaactataggatg-aaaagtgcaattaagc 16169175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 21835286 - 21835234
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||| ||||||||||||||| | ||||||||    
T  21835286 agaaacactagtaaaataccaaaataccccctctgcagttaaatgtcgaggaa 21835234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 41662570 - 41662522
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||||| |  | ||||||||||||||||    
T  41662570 gcaaaatcgcacaattggcaaactatatgggggaaaagtgcaattaagc 41662522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 606
Target Start/End: Complemental strand, 6198719 - 6198650
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactata-ggaagaaaaagtgcaattaagcataaaaatt 606  Q
    ||||||||||| |||||||||||||||||| | || ||| || || |||||||||||||||| ||||||||    
T  6198719 aaactatagggtgcaaaatcgcacaattggaagaccatatgggag-aaaagtgcaattaagcctaaaaatt 6198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 30755683 - 30755631
Alignment:
Q  273 gttaactatcgaggaaaacgaaaatccagaattatcatcatcatgttcatgttcat 328  Q
    |||||||| |||| ||||| |||||||||||||||||   ||||||||||||||||    
T  30755683 gttaactaccgagtaaaacaaaaatccagaattatca---tcatgttcatgttcat 30755631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 9623887 - 9623934
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||||||||    
T  9623887 gcaaaatcacacgattggcaaactataggatg-aaaagtgcaattaagc 9623934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 12281173 - 12281125
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  12281173 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 12281125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 38134328 - 38134380
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||| ||||| |||||||||||  |||||||    
T  38134328 agaaacactagtaaaataccaaaataccccctttgcagttaactgccgaggaa 38134380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 41662408 - 41662456
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  41662408 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 41662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 392 - 525
Target Start/End: Original strand, 14011899 - 14012035
Alignment:
Q  392 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaagag---gaagtacaaagaattacaaagaatcaattagaagcagttac 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| |||||||||||||| |    
T  14011899 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaacagcaggaagtacaaagaattacaaagaatgaattagaagcagtttc 14011998  T
Q  489 aaatggaaacgcaataattagaagcaatttctatgaa 525  Q
    |||||||||||||||||||||||||||||||||||||    
T  14011999 aaatggaaacgcaataattagaagcaatttctatgaa 14012035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 392 - 525
Target Start/End: Original strand, 17597123 - 17597259
Alignment:
Q  392 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaagag---gaagtacaaagaattacaaagaatcaattagaagcagttac 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||| |    
T  17597123 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaacagcaagaagtacaaagaattacaaagaatcaattagaagcagtttc 17597222  T
Q  489 aaatggaaacgcaataattagaagcaatttctatgaa 525  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  17597223 aaatggaaaggcaataatcagaagcaatttctatgaa 17597259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 17596897 - 17596961
Alignment:
Q  226 tgtttagctaagaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    ||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  17596897 tgtttggctgagaaacaccagtaaaataccaaaataccccctctgcagttaactgtcgaggaaaa 17596961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 479 - 525
Target Start/End: Original strand, 14012065 - 14012111
Alignment:
Q  479 aagcagttacaaatggaaacgcaataattagaagcaatttctatgaa 525  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14012065 aagcagtttcaaatggaaacgcaataattagaagcaatttctatgaa 14012111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 14012389 - 14012343
Alignment:
Q  270 gcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  14012389 gcagttaactaccgaggaaaacgaaaatccagaattatcatcatcat 14012343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 14011771 - 14011835
Alignment:
Q  265 cctctgcagttaactatcgaggaaaacgaaaatcc-agaattatcatcatcatgttcatgttcat 328  Q
    |||| ||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||||    
T  14011771 cctcggcagttaactaccgaggaaaacaaaaatcttagaattatcatcatcatgttcatgttcat 14011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 17597000 - 17597059
Alignment:
Q  270 gcagttaactatcgaggaaaacgaaaa-tccagaattatcatcatcatgttcatgttcat 328  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  17597000 gcagttaactacagaggaaaacgaaaaatccagaattatcatcatcatgttcacgttcat 17597059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 32734001 - 32734047
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  32734001 gcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaa 32734047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 7654541 - 7654601
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  7654541 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 7654601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 10087851 - 10087911
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||| |||  | ||||||||||||||||    
T  10087851 aaactatggggtgcaaaatcgcacaattggcaaactaaaggggggaaaagtgcaattaagc 10087911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 33974292 - 33974352
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | |||| |||||||||||    
T  33974292 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagc 33974352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 17597536 - 17597494
Alignment:
Q  272 agttaactatcgaggaaaacgaaaatccagaattatcatcatc 314  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  17597536 agttaactgccgaggaaaacgaaaatccagaattatcatcatc 17597494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 35241890 - 35241931
Alignment:
Q  247 taaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  35241890 taaaataccaaaataccccctctgcagttaactgtcgaggaa 35241931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 29074365 - 29074405
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  29074365 aaactatggggtgcaaaatcgcacaattggcaaactatagg 29074405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 29079129 - 29079169
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  29079129 aaactatggggtgcaaaatcgcacaattggcaaactatagg 29079169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 29106938 - 29106978
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  29106938 aaactatggggtgcaaaatcgcacaattggcaaactatagg 29106978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 603
Target Start/End: Original strand, 13579656 - 13579709
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaa 603  Q
    |||||||||||||||| |||||| ||||| || |||||||||||||||| |||||    
T  13579656 gcaaaatcgcacaattagcaaacgatagggag-aaaagtgcaattaagcctaaaa 13579709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 18242161 - 18242209
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  ||||| | ||||| |||||||||||    
T  18242161 gcaaaatcgcacaattggcaaaagatagggaaaaaaaatgcaattaagc 18242209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 22684351 - 22684410
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||| |||||||||||||||||| |  | ||||||||||||||||    
T  22684351 aaactatggggtgcaaaatcacacaattggcaaactataag-gggaaaagtgcaattaagc 22684410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 22754717 - 22754658
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||| |||||||||||||||||| |  | ||||||||||||||||    
T  22754717 aaactatggggtgcaaaatcacacaattggcaaactataag-gggaaaagtgcaattaagc 22754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 395 - 525
Target Start/End: Original strand, 14456686 - 14456809
Alignment:
Q  395 tgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaagaggaagtacaaagaattacaaagaatcaattagaagcagttacaaatgg 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | |       || ||||||||||||||||||||||||| |||||||    
T  14456686 tgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaacagcagg-------aagtacaaagaatcaattagaagcagtttcaaatgg 14456778  T
Q  495 aaacgcaataattagaagcaatttctatgaa 525  Q
    ||| |||||||||||||||||||||||||||    
T  14456779 aaaggcaataattagaagcaatttctatgaa 14456809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 14456556 - 14456619
Alignment:
Q  265 cctctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcatgttcatgttcat 328  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14456556 cctcggcagttaactaccgaggaaaacgaaaatccagaattatcatcatcatgttcatgctcat 14456619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 958715 - 958662
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaa 289  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  958715 agaaacaccagtaaaataccaaaataccccctctgcagttaactaccgaggaaa 958662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 7664666 - 7664726
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  7664666 aaactatggggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagc 7664726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 17851039 - 17850979
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  17851039 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 17850979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37720265 - 37720205
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  37720265 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 37720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 42341587 - 42341535
Alignment:
Q  27 ggaataattaatcaaaataaaaatactaaaaattaagggtagaccccttctta 79  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  42341587 ggaataattactcaaaataaaaatactaaaaattaagagtagaccacttctta 42341535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 549 - 604
Target Start/End: Complemental strand, 5378710 - 5378655
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||| ||||||    
T  5378710 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcctaaaaa 5378655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 8851209 - 8851151
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  8851209 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 8851151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 603
Target Start/End: Original strand, 41790913 - 41790971
Alignment:
Q  545 gggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaa 603  Q
    |||||||||||||||||||||||||| ||||||  | |||||||||||||||| |||||    
T  41790913 gggggcaaaatcgcacaattggcaaaatataggggggaaaagtgcaattaagcctaaaa 41790971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 42341063 - 42341017
Alignment:
Q  160 ttcttttaattatcttttactccacggtacaatatactactactcat 206  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  42341063 ttcttttaattatcttctactccacggtacaatagactactactcat 42341017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 14456458 - 14456511
Alignment:
Q  226 tgtttagctaagaaacaccaataaaataccaaaatatcccctctgcagttaact 279  Q
    ||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  14456458 tgtttggctgagaaacaccagtaaaataccaaaataccccctctgcagttaact 14456511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 7979996 - 7980055
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||| |||||||||| || ||||||||||||||||||    
T  7979996 aaactatggggtgcaaaatcgcacaattagcaaactata-gaggaaaaagtgcaattaagc 7980055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 8851575 - 8851635
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  8851575 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 8851635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 19694269 - 19694317
Alignment:
Q  268 ctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  19694269 ctgcagttaactaccgaggaaaatgaaaacccagaattatcatcatcat 19694317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 19141504 - 19141446
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    ||||||| ||| ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  19141504 aaactatggggtgcaaaat-gcacaattggcaaactatagggggaaaaagtgcaattaag 19141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 19694204 - 19694258
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||||| ||||||||||||||| |||||||| |||||||| ||||| ||||    
T  19694204 agaaacaccagtaaaataccaaaataccccctctgtagttaactgtcgagaaaaa 19694258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 26692457 - 26692399
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| ||||||||||   ||||||||||||||||    
T  26692457 aaactatggggtgcaaaatcgcacaattgacaaactatagagggaaaaagtgcaattaa 26692399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 26692813 - 26692871
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||||||||||||||   | ||||||||||||||    
T  26692813 aaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaa 26692871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 16911262 - 16911326
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaa 602  Q
    ||||||| ||| |||||||||||||||||||||||||||||  |  ||||||||||||||| ||||    
T  16911262 aaactatggggtgcaaaatcgcacaattggcaaactatagg-ggcgaaagtgcaattaagcttaaa 16911326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 5379964 - 5380012
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||| ||||||||||  | ||||||||||||||||    
T  5379964 gcaaaatcgcacaattggtaaactataggggggaaaagtgcaattaagc 5380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 7664309 - 7664249
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||  ||||||||||  | ||||||||||||||||    
T  7664309 aaactatggggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaattaagc 7664249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 16910888 - 16910828
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||| | |  | ||||||||||||||||    
T  16910888 aaactatggggtgcaaaatcgcacaattggcaaactacatgggggaaaagtgcaattaagc 16910828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 17851395 - 17851455
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| | |||||||||||||||||||||||||  |  |||||||||||||||||    
T  17851395 aaactatggggtgtaaaatcgcacaattggcaaactataaaagaaaaaagtgcaattaagc 17851455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 42177321 - 42177269
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||| |||||||||||||||||  |||||||    
T  42177321 agaaacactattaaaataccaaaataccccctctgcagttaactgccgaggaa 42177269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 6325352 - 6325399
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    ||||||||||||||||||||||||||| |  | |||||||||||||||    
T  6325352 gcaaaatcgcacaattggcaaactatatgggggaaaagtgcaattaag 6325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 42176049 - 42176096
Alignment:
Q  238 aaacaccaataaaataccaaaatatcccctctgcagttaactatcgag 285  Q
    |||||| | ||||||||||||||| ||||||||||||||||| |||||    
T  42176049 aaacactagtaaaataccaaaataccccctctgcagttaactgtcgag 42176096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 5793508 - 5793450
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||||||  ||||||||||||||||||||||||| | |  | ||||||||||||||    
T  5793508 aaactataggatgcaaaatcgcacaattggcaaactacaagggggaaaagtgcaattaa 5793450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 591
Target Start/End: Complemental strand, 6324966 - 6324924
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaa 591  Q
    |||||||||||||||||||||||||||||  | ||||||||||    
T  6324966 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaa 6324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 602
Target Start/End: Original strand, 18750119 - 18750183
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaa 602  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | | |||||||||||||| ||||    
T  18750119 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggagaagtgcaattaagcttaaa 18750183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Original strand, 19141854 - 19141882
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  19141854 gcaaaatcgcacaattggcaaactatagg 19141882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 20347469 - 20347517
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  20347469 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20347517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 30190972 - 30190924
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  30190972 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 30190924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 38490846 - 38490893
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||| |||||||||| ||  |||||||||||||||    
T  38490846 gcaaaatcgcacaattggtaaactatagggag-gaaagtgcaattaagc 38490893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 392 - 525
Target Start/End: Original strand, 40140864 - 40140990
Alignment:
Q  392 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaagaggaagtacaaagaattacaaagaatcaattagaagcagttacaaa 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |      || | ||  |||||| |||| ||||||||||||| ||||    
T  40140864 ttctgagtcgaaatcaagatttaatgtagatttaaatctttctatgaagtgaaca------ac-aggacgtacaaataatcgattagaagcagtttcaaa 40140956  T
Q  492 tggaaacgcaataattagaagcaatttctatgaa 525  Q
    |||||| |||||||||||||||||||||||||||    
T  40140957 tggaaaggcaataattagaagcaatttctatgaa 40140990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 37972389 - 37972458
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaatt 606  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | |||||||||||||||| | ||||||    
T  37972389 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagccttaaaatt 37972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 9035286 - 9035346
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  9035286 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 9035346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 10533095 - 10533035
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  10533095 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 10533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37888894 - 37888834
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  37888894 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 37888834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 37889252 - 37889312
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  37889252 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 37889312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 604
Target Start/End: Complemental strand, 20418949 - 20418882
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | |||||||||||||| | ||||||    
T  20418949 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaaacctaaaaa 20418882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 45350873 - 45350927
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  45350873 agaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 45350927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 16198970 - 16199030
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||    ||||||||||||||||||    
T  16198970 aaactatggggtgcaaaatcgcacaattggcaaactataatgggaaaaagtgcaattaagc 16199030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 17157028 - 17156968
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  17157028 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 17156968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 20419317 - 20419377
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  20419317 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 20419377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 22740217 - 22740157
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  22740217 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 22740157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 29292971 - 29292923
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  29292971 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 29292923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 40141265 - 40141222
Alignment:
Q  271 cagttaactatcgaggaaaacgaaaatccagaattatcatcatc 314  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  40141265 cagttaactgccgaggaaaacgaaaatccagaattatcatcatc 40141222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 18864028 - 18863970
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||    
T  18864028 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaa 18863970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 36527444 - 36527387
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  ||||||||||||||||    
T  36527444 aaactatggggtgcaaaatcgcacaattgacaaactatagg-ggaaaaagtgcaattaa 36527387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 3204728 - 3204670
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  |  |||||||||||||||    
T  3204728 aaactatggggtgcaaaatcgcacaattggcaaactatagg--gggaaagtgcaattaagc 3204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 3205098 - 3205146
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  3205098 gcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 3205146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 13741618 - 13741558
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||| ||||||||||  | |||| |||||||||||    
T  13741618 aaactatggggtgcaaaatcgcacaattggtaaactataggggggaaaaatgcaattaagc 13741558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 13744226 - 13744285
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  13744226 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 13744285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 604
Target Start/End: Original strand, 23686717 - 23686777
Alignment:
Q  544 agggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||| ||||||||||||||| |||||  |||||  |||||||||||||||||| ||||||    
T  23686717 aggggtcaaaatcgcacaattagcaaaagatagggggaaaaagtgcaattaagcctaaaaa 23686777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 29293351 - 29293399
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||||    
T  29293351 gcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagc 29293399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37972021 - 37971961
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||| |||    ||||||||||||||||    
T  37972021 aaactatggggtgcaaaatcgcacaattggcaaactacaggggagaaaagtgcaattaagc 37971961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 40142768 - 40142716
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||| ||||||||||||||| | ||||||||    
T  40142768 agaaacactagtaaaataccaaaataccccctctgcagttaattgtcgaggaa 40142716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 45351782 - 45351730
Alignment:
Q  238 aaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    ||||| || |||||||| |||||| ||||||||||||||||| ||||||||||    
T  45351782 aaacatcagtaaaatactaaaataccccctctgcagttaactgtcgaggaaaa 45351730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 48359380 - 48359321
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  48359380 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 48359321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 9034929 - 9034862
Alignment:
Q  537 aaactatagggg-gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaa 603  Q
    ||||||| |||| ||| |||||||||||||||||| ||||||  | |||||||||||||||| |||||    
T  9034929 aaactatgggggtgcagaatcgcacaattggcaaattataggggggaaaagtgcaattaagcctaaaa 9034862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 27919087 - 27919138
Alignment:
Q  265 cctctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    |||| |||||||||||  |||||||| ||||| |||||||||||||||||||    
T  27919087 cctcggcagttaactacagaggaaaatgaaaacccagaattatcatcatcat 27919138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 22740584 - 22740641
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||    
T  22740584 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaa 22740641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 42025190 - 42025140
Alignment:
Q  238 aaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||| ||||||||||||||||| |||||||| ||||||||  |||||||    
T  42025190 aaacactaataaaataccaaaataccccctctgtagttaactgccgaggaa 42025140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 602
Target Start/End: Original strand, 9412330 - 9412383
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaa 602  Q
    ||||||||||||||||||||||  |||||  | |||||||||||||||| ||||    
T  9412330 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagcctaaa 9412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 594
Target Start/End: Original strand, 48359663 - 48359707
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaatta 594  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||    
T  48359663 gcaaaatcgcacaattggtaaactatagg-ggaaaaagtgcaatta 48359707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 3687661 - 3687709
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  3687661 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 3687709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Original strand, 18864407 - 18864435
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  18864407 gcaaaatcgcacaattggcaaactatagg 18864435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 27919594 - 27919547
Alignment:
Q  268 ctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    ||||||||||||| ||||||||  ||||| |||||||||||||||||||    
T  27919594 ctgcagttaactaccgaggaaat-gaaaacccagaattatcatcatcat 27919547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 36527803 - 36527851
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||| ||||||||||||||| || | |||| |||||||||||    
T  36527803 gcaaaatcgcataattggcaaactatatgagggaaaaatgcaattaagc 36527851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 38826918 - 38826966
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| |||||||||||  | |||| |||||||||||    
T  38826918 gcaaaatcgcacaattgacaaactataggggggaaaaatgcaattaagc 38826966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 42418652 - 42418592
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||   ||||||||||||||| ||||||||||||  | ||||||| ||||||||    
T  42418652 aaactataggatacaaaatcgcacaattagcaaactataggggggaaaagtgaaattaagc 42418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 13918507 - 13918447
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13918507 aaactatggggtgcaaaatcgcacaattggcaaactataggaggaaaaagtgcaattaagc 13918447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 593
Target Start/End: Complemental strand, 32162790 - 32162734
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaatt 593  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  32162790 aaactatggggtgcaaaattgcacaattggcaaactataggaagaaaaagtgcaatt 32162734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 46824271 - 46824331
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  46824271 aaactatggggtgcaaaattgcacaattggcaaactataggaggaaaaagtgcaattaagc 46824331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 596
Target Start/End: Original strand, 50526465 - 50526524
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    ||||||| ||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  50526465 aaactatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaag 50526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 6703509 - 6703455
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaa 603  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  6703509 gcaaaatcgcacaattggtaaactataggaggaaaaagtgcaattaagcctaaaa 6703455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 4692426 - 4692486
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  4692426 aaactatggggtgcaaaattgcacaattggcaaactatagggggaaaaagtgcaattaagc 4692486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 9347187 - 9347127
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  9347187 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 9347127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 13918872 - 13918920
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  13918872 gcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaagc 13918920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 19007795 - 19007755
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19007795 aaactatagggggcaaaatcgcacaattggcaaactatagg 19007755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 20480605 - 20480664
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  20480605 aaactatagggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 20480664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 26814755 - 26814695
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  26814755 aaactatggggtgcaaaatcgcacaattgacaaactatagggaggaaaagtgcaattaagc 26814695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 32163036 - 32163096
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  32163036 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 32163096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 44911430 - 44911488
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    |||| |||||| |||||||||||||||||||||||||||||  |||||| |||||||||    
T  44911430 aaacaatagggtgcaaaatcgcacaattggcaaactatagggggaaaaaatgcaattaa 44911488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 50430074 - 50430132
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  50430074 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 50430132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 50615294 - 50615241
Alignment:
Q  544 agggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  50615294 agggggcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 50615241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 50623122 - 50623069
Alignment:
Q  544 agggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  50623122 agggggcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 50623069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 27172176 - 27172117
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  27172176 aaactatggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 27172117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 46043472 - 46043524
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||||| |||||||||||||||| |||||||    
T  46043472 agaaacacgagtaaaataccaaaatatctcctctgcagttaactaccgaggaa 46043524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 48105109 - 48105169
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||| |  | ||||||||||||||||    
T  48105109 aaactatggggtgcaaaatcgcacaattggcaaactataagggggaaaagtgcaattaagc 48105169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 50036879 - 50036938
Alignment:
Q  268 ctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcatgttcatgttcat 328  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||||||||    
T  50036879 ctgcagttaactaccgaagaaaatgaaaa-ccagaattatcatcatcatattcatgttcat 50036938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 1167519 - 1167582
Alignment:
Q  227 gtttagctaagaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||| ||| |||||||| | ||||||||||||||| |||||||||||||||||  |||||||||    
T  1167519 gtttggctgagaaacacaagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 1167582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 604
Target Start/End: Original strand, 19008743 - 19008810
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||| ||| |||||||||||||||||  ||||||||||  | |||||||||||||||| ||||||    
T  19008743 aaactatggggtgcaaaatcgcacaattgcgaaactataggggggaaaagtgcaattaagcctaaaaa 19008810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 28634150 - 28634208
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||    
T  28634150 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaa 28634208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 46823892 - 46823846
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||    
T  46823892 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 46823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 48104739 - 48104681
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||    
T  48104739 aaactatggggtgcaaaatcgcacaattgccaaactataggggggaaaagtgcaattaa 48104681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 48815268 - 48815210
Alignment:
Q  232 gctaagaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||||||||| |||||  |||||||||||  ||||||||||||| ||||||||||    
T  48815268 gctaagaaacaccactaaaaccccaaaatatcctttctgcagttaactgtcgaggaaaa 48815210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 20371345 - 20371405
Alignment:
Q  537 aaactatagggg-gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  20371345 aaactatgggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 20371405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 6703887 - 6703947
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||| |||||||||||||||||||||    ||||||||||||||||    
T  6703887 aaactatggggtgcaaaattgcacaattggcaaactataggggagaaaagtgcaattaagc 6703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 20480228 - 20480169
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  20480228 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 20480169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 26815112 - 26815172
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||  ||||||||||  | ||||||||||||||||    
T  26815112 aaactatggggtgcaaaatcgcacaattgataaactataggggggaaaagtgcaattaagc 26815172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 28633781 - 28633721
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||| ||||||||||||||||| |  | ||||||||||||||||    
T  28633781 aaactatggggtgcaaaatcgtacaattggcaaactataagggggaaaagtgcaattaagc 28633721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 50615614 - 50615673
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  50615614 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 50615673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 50623442 - 50623501
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  50623442 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 50623501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 542 - 597
Target Start/End: Complemental strand, 39690850 - 39690795
Alignment:
Q  542 atagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||| ||||||||||||||||||| || ||||||  |||||||||||| |||||    
T  39690850 atagggtgcaaaatcgcacaattggccaaatatagggggaaaaagtgcaactaagc 39690795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 15549823 - 15549869
Alignment:
Q  233 ctaagaaacaccaataaaataccaaaatatcccctctgcagttaact 279  Q
    ||||||||||| | ||||||||||||||| || ||||||||||||||    
T  15549823 ctaagaaacactagtaaaataccaaaatacccactctgcagttaact 15549869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 42611234 - 42611188
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||||||||||||||||||||||| |  | ||||||||||||||    
T  42611234 gcaaaatcgcacaattggcaaactataagggggaaaagtgcaattaa 42611188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 50949210 - 50949164
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    |||||||||||||||||||| ||||||||| | |||||| |||||||    
T  50949210 gcaaaatcgcacaattggcagactataggagggaaaagtacaattaa 50949164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 602
Target Start/End: Complemental strand, 44911074 - 44911021
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaa 602  Q
    |||||||||||||||||||||| ||||||  |  ||||||||||||||| ||||    
T  44911074 gcaaaatcgcacaattggcaaaatatagggggggaaagtgcaattaagcctaaa 44911021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 999530 - 999577
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  999530 gcaaaatcgcacaattggcaatctatagg-gggaaaagtgcaattaagc 999577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 4692082 - 4692023
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||  ||||||||| |||||| |||||||||| || || |||||||||||||||    
T  4692082 aaactataggatgcaaaatcgtacaattagcaaactata-gaggagaaagtgcaattaagc 4692023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 8108998 - 8109046
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  8108998 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 8109046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 9347544 - 9347584
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| ||||||| |||||||||||||||||||||    
T  9347544 aaactatggggtgcaaaattgcacaattggcaaactatagg 9347584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 21687086 - 21687026
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||  |||||||| |||||||||||  | ||||||||||||||||    
T  21687086 aaactatggggtgcaaaattacacaattgacaaactataggggggaaaagtgcaattaagc 21687026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 27172546 - 27172594
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||| || |||  | ||||||||||||||||    
T  27172546 gcaaaatcgcacaattggcaaagtacaggggggaaaagtgcaattaagc 27172594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 39692005 - 39692053
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| |||| ||||||  | ||||||||||||||||    
T  39692005 gcaaaatcgcacaattgacaaaatataggggggaaaagtgcaattaagc 39692053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 41082958 - 41082910
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  |||||||| |||||||||    
T  41082958 gcaaaatcgcacaattggcaaaagatagggggaaaaagtacaattaagc 41082910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 47955355 - 47955307
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  47955355 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 47955307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 49317800 - 49317753
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||    
T  49317800 gcaaaattgcacaattggcaaactatagg-gggaaaagtgcaattaagc 49317753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Original strand, 49318171 - 49318199
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  49318171 gcaaaatcgcacaattggcaaactatagg 49318199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 27238526 - 27238460
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaa 603  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||| |||||    
T  27238526 aaactatagggtgcaaaatcgcacaattggcaaactataggagggaaaagtacaattaagcctaaaa 27238460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 10348792 - 10348852
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  10348792 aaactatggggtgcaaaatcgcacaattggcaaactatatgaggaaaaagtgcaattaagc 10348852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 42455851 - 42455791
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  42455851 aaactatagggggcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 42455791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 53766224 - 53766166
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  53766224 aaactatggggtgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaattaa 53766166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 24485453 - 24485512
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  24485453 aaactatggggtgcaaaatcgcacaattggcaaactatagggag-aaaagtgcaattaagc 24485512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 48159958 - 48159898
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  48159958 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 48159898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 585
Target Start/End: Complemental strand, 24485082 - 24485034
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaa 585  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  24485082 aaactatggggtgcaaaatcgcacaattggcaaactataggaggaaaaa 24485034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 40848954 - 40849014
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||||   | ||||||||||||||||    
T  40848954 aaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaagc 40849014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 42673038 - 42672979
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  42673038 aaactatggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 42672979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 48160326 - 48160386
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  |  |||||||||||||||    
T  48160326 aaactatggggtgcaaaatcgcacaattggcaaactatagggggggaaagtgcaattaagc 48160386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 53687949 - 53687889
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  53687949 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 53687889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 53766572 - 53766632
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||| ||||||| |||||||| ||||||||||||  | ||||||||||||||||    
T  53766572 aaactatagggtgcaaaattgcacaatttgcaaactataggggggaaaagtgcaattaagc 53766632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 604
Target Start/End: Complemental strand, 47665960 - 47665905
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||||||||||||| ||||||||| |  |||||||||||||||||| ||||||    
T  47665960 gcaaaatcgcacaattgacaaactataaggggaaaaagtgcaattaagcctaaaaa 47665905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 26007624 - 26007670
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||    
T  26007624 gcaaaatcgtacaattggcaaactatagggggaaaaagtgcaattaa 26007670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 27238893 - 27238951
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||||||||||||||   | ||||||||||||||    
T  27238893 aaactatggggtgcaaaatcgcacaattggcaaactatagaggggaaaagtgcaattaa 27238951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 3353188 - 3353129
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  3353188 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 3353129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 36180983 - 36181043
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||  |||||||||||||||  ||||||||||| || ||||||||||||||||    
T  36180983 aaactatggggtacaaaatcgcacaattaacaaactatagggaggaaaagtgcaattaagc 36181043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 40848581 - 40848522
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| | |||||||||||||||||||||||||||  | ||||||||||||||||    
T  40848581 aaactatggggtgtaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 40848522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 42673289 - 42673348
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  42673289 aaactatggggtgcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagc 42673348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 44008406 - 44008453
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  44008406 gcaaaattgcacaattggcaaactataggatg-aaaagtgcaattaagc 44008453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 47666340 - 47666388
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||    
T  47666340 gcaaaattgcacaattggcaaactataggggggaaaagtgcaattaagc 47666388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 53688308 - 53688355
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||    
T  53688308 gcaaaatcgcacaattggcaaactatagg-ggagaaagtgcaattaagc 53688355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 596
Target Start/End: Original strand, 22429589 - 22429647
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaag 596  Q
    ||||||| ||| ||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  22429589 aaactatggggtgcaaaatcgcacaattgacaaactatagg-agggaaagtgcaattaag 22429647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 22429219 - 22429158
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagca 598  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||    |||||||||||||||||    
T  22429219 aaactattgggtgcaaagtcgcacaattggcaaaatataggggagaaaagtgcaattaagca 22429158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 558
Target Start/End: Original strand, 3353508 - 3353536
Alignment:
Q  530 aagggggaaactatagggggcaaaatcgc 558  Q
    |||||||||||||||||||||||||||||    
T  3353508 aagggggaaactatagggggcaaaatcgc 3353536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Original strand, 3353556 - 3353584
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  3353556 gcaaaatcgcacaattggcaaactatagg 3353584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 20969024 - 20969072
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  20969024 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 20969072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 26007242 - 26007202
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| ||||||||||||||||| |||||||||||    
T  26007242 aaactatggggtgcaaaatcgcacaattgacaaactatagg 26007202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 558
Target Start/End: Original strand, 42456152 - 42456180
Alignment:
Q  530 aagggggaaactatagggggcaaaatcgc 558  Q
    |||||||||||||||||||||||||||||    
T  42456152 aagggggaaactatagggggcaaaatcgc 42456180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 537 - 606
Target Start/End: Complemental strand, 12498628 - 12498559
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaatt 606  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||    
T  12498628 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagcctaaaaatt 12498559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 10098580 - 10098520
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||  ||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  10098580 aaactataggatgcaaaatcgcacaattgacaaactataggaggaaaaagtgcaattaagc 10098520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 12498921 - 12498981
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  12498921 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 12498981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 26571157 - 26571217
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  26571157 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 26571217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 2817198 - 2817152
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  2817198 gcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaa 2817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 13707389 - 13707443
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  13707389 agaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 13707443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 21207287 - 21207229
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  21207287 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaa 21207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 39742541 - 39742595
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  39742541 agaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 39742595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 19514956 - 19515016
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  19514956 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 19515016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 25940582 - 25940522
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||| ||||||||||||||||| |||||||||||   ||||| |||||||||||    
T  25940582 aaactatagggtgcaaaatcgcacaattgacaaactataggggaaaaaaatgcaattaagc 25940522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 29430683 - 29430631
Alignment:
Q  238 aaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||| ||||||||||||||| |||||||||||||||||  |||||||||    
T  29430683 aaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 29430631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 34147515 - 34147563
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  34147515 gcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagc 34147563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 25983368 - 25983423
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaac 291  Q
    |||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||    
T  25983368 agaaacactagtaaaataccacaataccccctctgcagttaactaccgaggaaaac 25983423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 10098934 - 10098991
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||||||||||| ||||||||||| || ||||||||||||||    
T  10098934 aaactatggggtgcaaaatcgcacaattgacaaactatagg-aggaaaagtgcaattaa 10098991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 13707945 - 13707899
Alignment:
Q  270 gcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||    
T  13707945 gcagttaactaccgagaaaaatgaaaatccagaattatcatcatcat 13707899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 599
Target Start/End: Original strand, 22729433 - 22729494
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcat 599  Q
    ||||||| ||| |||||||||||||||||||||| ||||||  | ||||||||||||||||||    
T  22729433 aaactatggggtgcaaaatcgcacaattggcaaattatagg-gggaaaagtgcaattaagcat 22729494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 42098269 - 42098323
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    ||||||| || |||||||||||||||||| ||||||||||||||  |||||||||    
T  42098269 agaaacatcagtaaaataccaaaatatcctctctgcagttaactgccgaggaaaa 42098323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 3888300 - 3888240
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||| |||||||||||||||||||  | ||| ||||||||||||    
T  3888300 aaactatggggtgcaaaatcgtacaattggcaaactataggggggaaatgtgcaattaagc 3888240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 605
Target Start/End: Original strand, 16466747 - 16466803
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaat 605  Q
    |||||||||||||||| ||||| ||||||  | |||||||||||||||| |||||||    
T  16466747 gcaaaatcgcacaattagcaaaatataggggggaaaagtgcaattaagcctaaaaat 16466803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 19514587 - 19514547
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  19514587 aaactatggggtgcaaaatcgcacaattggcaaactatagg 19514547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 26570790 - 26570730
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||| ||||||||    
T  26570790 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgtaattaagc 26570730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37610262 - 37610203
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  37610262 aaactatggggtgcaaaatcacacaattggcaaactatagg-gggaaaagtgcaattaagc 37610203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 37780380 - 37780321
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  37780380 aaactatggggtgcaaaatcacacaattggcaaactatagg-gggaaaagtgcaattaagc 37780321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 25941019 - 25941074
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||||||| ||||  |||||||||||| | ||||||||||||||||| |||||    
T  25941019 gcaaaatcgcataattaacaaactataggagggaaaagtgcaattaagcaaaaaaa 25941074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 29430076 - 29430127
Alignment:
Q  265 cctctgcagttaactatcgaggaaaacgaaaatccagaattatcatcatcat 316  Q
    |||| ||||||||||| |||| |||| ||||| |||||||||||||||||||    
T  29430076 cctcggcagttaactaccgagaaaaatgaaaacccagaattatcatcatcat 29430127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Original strand, 41072207 - 41072254
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaa 584  Q
    ||||||||||| ||||||||| ||||||| |||||||||||| |||||    
T  41072207 aaactatagggtgcaaaatcgtacaattgacaaactataggaggaaaa 41072254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 43464197 - 43464251
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||||| ||||||    
T  43464197 gcaaaatcgcacaattgacaaactatagg-gggaaaagtgcaattaagcctaaaaa 43464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Original strand, 3888655 - 3888713
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| ||| ||||||||| |||||||||||| |||| || | ||||||||||||||    
T  3888655 aaactatggggtgcaaaatcgtacaattggcaaattataagagggaaaagtgcaattaa 3888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 11316763 - 11316717
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaa 595  Q
    ||||||| | |||||||||||||||||||| | ||||||||||||||    
T  11316763 gcaaaattgtacaattggcaaactataggagggaaaagtgcaattaa 11316717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 43463816 - 43463778
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactata 575  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  43463816 aaactatggggtgcaaaatcgcacaattggcaaactata 43463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 26020499 - 26020451
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||| |||||  ||||| || ||||||||||||||||    
T  26020499 gcaaaatcgcacaattagcaaaagatagggaggaaaagtgcaattaagc 26020451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 558
Target Start/End: Original strand, 37610575 - 37610603
Alignment:
Q  530 aagggggaaactatagggggcaaaatcgc 558  Q
    |||||||||||||||||||||||||||||    
T  37610575 aagggggaaactatagggggcaaaatcgc 37610603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 37780747 - 37780795
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||| ||||||||||||  | |||||| |||||||||    
T  37780747 gcaaaatcgcacaattagcaaactataggggggaaaagtacaattaagc 37780795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 42099187 - 42099135
Alignment:
Q  238 aaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaaaa 290  Q
    |||||||| |||||||| |||||| | ||||||||||||||| ||||| ||||    
T  42099187 aaacaccagtaaaatactaaaatacctcctctgcagttaactgtcgagaaaaa 42099135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 185267 - 185327
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  185267 aaactatggggtgcaaaatcgcacaattggcaaactatagggaggaaaagtgcaattaagc 185327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 4239359 - 4239419
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  4239359 aaactatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagc 4239419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 9380368 - 9380308
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  9380368 aaactatggggggcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 9380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 39744458 - 39744527
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaatt 606  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | |||||||||||||||| ||||||||    
T  39744458 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagcctaaaaatt 39744527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 293210 - 293270
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  293210 aaactatggggtgcaaaatcgcacaattgacaaactatagggggaaaaagtgcaattaagc 293270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 25161939 - 25161879
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  25161939 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 25161879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 28196766 - 28196826
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  28196766 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 28196826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 32703643 - 32703703
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  32703643 aaactatggggtgcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 32703703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 604
Target Start/End: Complemental strand, 9023305 - 9023238
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagcataaaaa 604  Q
    ||||||| ||| |||||||||||||||||||||||||||||    |||||||||||||||| ||||||    
T  9023305 aaactatggggtgcaaaatcgcacaattggcaaactataggggagaaaagtgcaattaagcctaaaaa 9023238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 598
Target Start/End: Complemental strand, 43292098 - 43292037
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagca 598  Q
    ||||||| ||| ||||||||||||||||| |||||||||||   ||||||||||||||||||    
T  43292098 aaactatggggtgcaaaatcgcacaattgacaaactataggggaaaaaagtgcaattaagca 43292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 9023673 - 9023733
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  9023673 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 9023733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 9380746 - 9380794
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  9380746 gcaaaatcgcacaattggcaaactataggggggaaaagtgcaattaagc 9380794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 23540245 - 23540305
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||| ||||||||||||||||| |||||||||||    ||||||||||||||||    
T  23540245 aaactatagggtgcaaaatcgcacaattgacaaactataggggtgaaaagtgcaattaagc 23540305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 28196407 - 28196347
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||| ||||||  | ||||||||||||||||    
T  28196407 aaactatggggtgcaaaatcgcacaattggcaaattataggggggaaaagtgcaattaagc 28196347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 39744077 - 39744031
Alignment:
Q  551 aaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||    
T  39744077 aaaatcgcacaattggtaaactatagggggaaaaagtgcaattaagc 39744031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 169063 - 169014
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaaga-aaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||    
T  169063 gcaaaatcgcacaattggcaaactatagggggagaaaagtgcaattaagc 169014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 23539900 - 23539842
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| |||||||||||||||||||||||||||||  |  |||||||||||||||    
T  23539900 aaactatggggtgcaaaatcgcacaattggcaaactatagg--gggaaagtgcaattaagc 23539842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 169432 - 169492
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||||||||||||| |||||||||||  | |||| |||||||||||    
T  169432 aaactatggggtgcaaaatcgcacaattgacaaactataggggggaaaaatgcaattaagc 169492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 292831 - 292783
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||||||||||||||||||||  | ||||||||||||||||    
T  292831 gcaaaattgcacaattggcaaactataggggggaaaagtgcaattaagc 292783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 17343509 - 17343457
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||| ||||||||||| ||||||||||||| ||||||||    
T  17343509 agaaacactagtaaaatatcaaaatatcccatctgcagttaactgtcgaggaa 17343457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 26207751 - 26207799
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||||    
T  26207751 gcaaaatcgcacaattggcaaactataggggggaaaaatgcaattaagc 26207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 48406378 - 48406418
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactatagg 577  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  48406378 aaactatagggtgcaaaatcgcacaattggcaaattatagg 48406418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 19994401 - 19994344
Alignment:
Q  231 agctaagaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||| |||||||| | ||||||||||||||| ||| |||||||||||||  |||||||    
T  19994401 agctgagaaacactagtaaaataccaaaataccccttctgcagttaactgccgaggaa 19994344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 39086628 - 39086676
Alignment:
Q  549 gcaaaatcgcacaattggcaaactata-ggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||||    
T  39086628 gcaaaatcgcacaattggcaaactatatgggag-aaaagtgcaattaagc 39086676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 54508869 - 54508816
Alignment:
Q  544 agggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||| |||||||| |||||||||||||  || ||| ||||||||||||||||||    
T  54508869 agggtgcaaaatcacacaattggcaaaagattggaggaaaaagtgcaattaagc 54508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 19993019 - 19993051
Alignment:
Q  247 taaaataccaaaatatcccctctgcagttaact 279  Q
    ||||||||||||||||||||||| |||||||||    
T  19993019 taaaataccaaaatatcccctctacagttaact 19993051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 24775788 - 24775836
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| ||||  |||||| | ||||||||||||||||    
T  24775788 gcaaaatcgcacaattgacaaaagataggagggaaaagtgcaattaagc 24775836  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Complemental strand, 26207409 - 26207381
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  26207409 gcaaaatcgcacaattggcaaactatagg 26207381  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 597
Target Start/End: Complemental strand, 32703270 - 32703226
Alignment:
Q  553 aatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||| ||||||  | ||||||||||||||||    
T  32703270 aatcgcacaattggcaaattataggggggaaaagtgcaattaagc 32703226  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 43292362 - 43292410
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||||| |||  | |||| |||||||||||    
T  43292362 gcaaaatcgcacaattggcaaactaaaggggggaaaaatgcaattaagc 43292410  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 577
Target Start/End: Original strand, 44468928 - 44468956
Alignment:
Q  549 gcaaaatcgcacaattggcaaactatagg 577  Q
    |||||||||||||||||||||||||||||    
T  44468928 gcaaaatcgcacaattggcaaactatagg 44468956  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 48406022 - 48405963
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||| ||||||| ||| |||||||||||||||||  | ||||||||||||||||    
T  48406022 aaactatggggtgcaaaattgcataattggcaaactatagg-gggaaaagtgcaattaagc 48405963  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 56505742 - 56505694
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  | ||||||||||||||||    
T  56505742 gcaaaatcgcacaattggcaaaagataggggggaaaagtgcaattaagc 56505694  T

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Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 597
Target Start/End: Original strand, 38690 - 38748
Alignment:
Q  539 actatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||| ||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  38690 actatggggtgcaaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagc 38748  T

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Target: scaffold0029 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 9952 - 9906
Alignment:
Q  551 aaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  9952 aaaatcgcacaattggcaaactatagggggaaaaagtgcaattaagc 9906  T

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Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 597
Target Start/End: Original strand, 10307 - 10370
Alignment:
Q  532 gggggaaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||  | |||||||| |||||||    
T  10307 ggggaaaactatagggtgcaaaatcggacaattggcaaactatagg--ggaaaagtgctattaagc 10370  T

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Target: scaffold0460 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 768 - 815
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  768 gcaaaatcgcacaattggcaaactatagg-ggaaaaagtgcaattaagc 815  T

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Target: scaffold0460; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Complemental strand, 379 - 331
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||    
T  379 gcaaaatcgcacaattgacaaactataggggggaaaagtgcaattaagc 331  T

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Target: scaffold0176 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 20036 - 20096
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| ||||||||||||||||||||| ||||||||| |  | ||||||||||||||||    
T  20036 aaactatggggggcaaaatcgcacaattgacaaactataagggggaaaagtgcaattaagc 20096  T

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Target: scaffold0176; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 19681 - 19643
Alignment:
Q  537 aaactatagggggcaaaatcgcacaattggcaaactata 575  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  19681 aaactatggggtgcaaaatcgcacaattggcaaactata 19643  T

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Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 50499 - 50559
Alignment:
Q  537 aaactatagggg-gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||| |||| |||||||||||||||||||||||||||||  | ||||||||||||||||    
T  50499 aaactatgggggtgcaaaatcgcacaattggcaaactatagg-gggaaaagtgcaattaagc 50559  T

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Target: scaffold1500 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 866 - 814
Alignment:
Q  236 agaaacaccaataaaataccaaaatatcccctctgcagttaactatcgaggaa 288  Q
    |||||||| | ||||||||||||||| |||||||||||||||||  |||||||    
T  866 agaaacactattaaaataccaaaataccccctctgcagttaactgccgaggaa 814  T

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Target: scaffold0802 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 1425 - 1473
Alignment:
Q  549 gcaaaatcgcacaattggcaaactataggaagaaaaagtgcaattaagc 597  Q
    ||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  1425 gcaaaatcgcacaattggcaaaagatagggggaaaaagtgcaattaagc 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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