View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_high_14 (Length: 410)

Name: NF20078_high_14
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_high_14
NF20078_high_14
[»] chr7 (11 HSPs)
chr7 (12-392)||(9948804-9949193)
chr7 (168-316)||(9942602-9942752)
chr7 (168-345)||(1032145-1032320)
chr7 (167-273)||(28782014-28782122)
chr7 (167-250)||(11621380-11621465)
chr7 (167-237)||(40871301-40871371)
chr7 (265-339)||(17193991-17194065)
chr7 (100-128)||(9482965-9482993)
chr7 (170-214)||(12622906-12622950)
chr7 (100-128)||(20549822-20549850)
chr7 (100-128)||(22602710-22602738)
[»] scaffold0300 (1 HSPs)
scaffold0300 (167-340)||(9503-9678)
[»] chr4 (9 HSPs)
chr4 (168-340)||(43499223-43499397)
chr4 (169-340)||(36651742-36651915)
chr4 (171-340)||(7743498-7743669)
chr4 (171-340)||(42718496-42718669)
chr4 (167-340)||(9896507-9896680)
chr4 (168-340)||(39059723-39059895)
chr4 (167-222)||(48640782-48640837)
chr4 (171-237)||(37870649-37870715)
chr4 (284-340)||(37870776-37870832)
[»] chr2 (15 HSPs)
chr2 (167-340)||(12410713-12410888)
chr2 (167-340)||(12422773-12422948)
chr2 (167-340)||(6764346-6764521)
chr2 (168-340)||(37647891-37648065)
chr2 (168-340)||(27271565-27271740)
chr2 (168-280)||(2702258-2702373)
chr2 (175-253)||(34394492-34394572)
chr2 (279-340)||(11031704-11031765)
chr2 (168-254)||(11031810-11031898)
chr2 (100-128)||(5367223-5367251)
chr2 (100-128)||(20242727-20242755)
chr2 (100-128)||(34691805-34691833)
chr2 (100-128)||(34714217-34714245)
chr2 (100-128)||(35056899-35056927)
chr2 (100-128)||(44860351-44860379)
[»] chr1 (16 HSPs)
chr1 (167-340)||(4532086-4532261)
chr1 (168-340)||(51534478-51534652)
chr1 (168-274)||(33766348-33766456)
chr1 (167-282)||(13182628-13182745)
chr1 (167-254)||(19227886-19227975)
chr1 (167-237)||(34549394-34549464)
chr1 (167-237)||(45432373-45432443)
chr1 (175-249)||(33936450-33936526)
chr1 (284-340)||(34549277-34549333)
chr1 (190-237)||(31911571-31911618)
chr1 (168-222)||(28756478-28756532)
chr1 (100-128)||(30749871-30749899)
chr1 (100-128)||(30771322-30771350)
chr1 (100-128)||(34371744-34371772)
chr1 (100-128)||(44482261-44482289)
chr1 (100-128)||(52903280-52903308)
[»] chr5 (8 HSPs)
chr5 (167-340)||(22639485-22639660)
chr5 (168-340)||(19021316-19021489)
chr5 (168-295)||(39143220-39143349)
chr5 (168-340)||(6537003-6537176)
chr5 (175-237)||(22580397-22580459)
chr5 (100-133)||(3966534-3966567)
chr5 (100-128)||(30502388-30502416)
chr5 (100-128)||(30542731-30542759)
[»] chr8 (14 HSPs)
chr8 (167-340)||(24503980-24504155)
chr8 (167-340)||(8444262-8444434)
chr8 (168-328)||(45547846-45548000)
chr8 (168-340)||(45540241-45540413)
chr8 (284-344)||(13089905-13089965)
chr8 (167-218)||(25582580-25582631)
chr8 (167-232)||(4034300-4034365)
chr8 (100-129)||(8847287-8847316)
chr8 (167-220)||(13089765-13089818)
chr8 (284-340)||(4034419-4034475)
chr8 (100-128)||(4786338-4786366)
chr8 (100-128)||(11927086-11927114)
chr8 (168-253)||(24581449-24581536)
chr8 (100-128)||(26902175-26902203)
[»] chr6 (9 HSPs)
chr6 (167-235)||(12912247-12912315)
chr6 (167-235)||(6029362-6029430)
chr6 (284-340)||(12912378-12912434)
chr6 (169-254)||(24393922-24394009)
chr6 (169-237)||(165542-165610)
chr6 (100-128)||(7027273-7027301)
chr6 (100-128)||(7265593-7265621)
chr6 (100-128)||(9025494-9025522)
chr6 (100-128)||(21924935-21924963)
[»] scaffold0041 (1 HSPs)
scaffold0041 (167-237)||(94911-94981)
[»] scaffold0037 (2 HSPs)
scaffold0037 (168-237)||(1008-1077)
scaffold0037 (284-340)||(891-947)
[»] chr3 (6 HSPs)
chr3 (168-222)||(15030113-15030167)
chr3 (100-128)||(7928481-7928509)
chr3 (100-128)||(8039835-8039863)
chr3 (190-222)||(20406426-20406458)
chr3 (100-128)||(25093533-25093561)
chr3 (100-128)||(40993335-40993363)
[»] scaffold0116 (1 HSPs)
scaffold0116 (103-132)||(9932-9961)
[»] scaffold0036 (1 HSPs)
scaffold0036 (100-128)||(9747-9775)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 392
Target Start/End: Complemental strand, 9949193 - 9948804
Alignment:
Q  12 atgaagcaaaaatattgacacaaagataggatatgatatagacaccaacacgccgacaccaataataatatatnnnnnnnnnnnnnnt------attcag 105  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||                     ||||||    
T  9949193 atgaagcaaaaatattgacacaaacatcggatatgatatagacaccaacacgccgacaccaataataatatataaaaaaaataaaaaataaaaaattcag 9949094  T
Q  106 tgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacannnnnnn-gaagaaactaaaatggattaaaatactgaaagcctgaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  9949093 tgtaattatatgtgtcggtgtcgcgtcaatatccacaccgatacgtgtccgacattttttttgaagaaactaaaatggattaaaatactgaaagcctgaa 9948994  T
Q  205 gatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggccaaaacatgaacaaaatagaaggctaccctgttaca 302  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9948993 gatttcagcacaaggagtaccaaaaccccagctaaaagagtcaattacaagagtgccaaaaggccaaaacatgaacaaaatagaaggctaccctgttaca 9948894  T
Q  303 taaatattcctaagcaaagtaaagggttcaaccaccataaataagacacgcataattcaaaaagtgtccgtgcttcatagacagaccacc 392  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||| |||||||    
T  9948893 taaatattcctaagcaaggtaaagggttcaaccaccatgaataagacacgcataatccaaaaagtatcggtgcttcatagactgaccacc 9948804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 9942602 - 9942752
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaaga--gtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||| || |||| |  ||||||||||||||||||||| ||    
T  9942602 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgtcaaaacctcaactaaaatagtcaattacaagagtgccaaaagg 9942701  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaag 316  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  9942702 ccaaaacaagaacaaaaaagaaggctactctgttacataaatattcctaag 9942752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 345
Target Start/End: Complemental strand, 1032320 - 1032145
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgcc-aaatg 264  Q
    ||||||||||| |||| |||| ||||||||||||| ||||||||||||| ||| |   ||||||||||||  ||||||||||||||||| |||| ||| |    
T  1032320 aagaaactaaattggactaaattactgaaagcctggagatttcagcacagggaatgctaaaaccccagctgaaagagtcaattacaagaatgccaaaacg 1032221  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccataaata 345  Q
    |||||||||||||||||| |     |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  1032220 gccaaaacatgaacaaaaaa-----ctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccatgaata 1032145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 28782014 - 28782122
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||| |    
T  28782014 gaagaaactaaaatggattaaaatactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaag 28782113  T
Q  265 gccaaaaca 273  Q
    |||||||||    
T  28782114 gccaaaaca 28782122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 11621465 - 11621380
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattac 250  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||||  |||||||||||||    
T  11621465 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattac 11621380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 40871301 - 40871371
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||||    
T  40871301 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagct 40871371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 17193991 - 17194065
Alignment:
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccacca 339  Q
    ||||||||| |  ||||| |||| |||||||| ||||| ||||||||| || ||| ||||||| |||||||||||    
T  17193991 gccaaaacaagctcaaaaaagaaagctaccctattacaaaaatattcccaaacaaggtaaaggattcaaccacca 17194065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 9482965 - 9482993
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  9482965 attcagtgtaattatatgtgtcggtgtcg 9482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 12622906 - 12622950
Alignment:
Q  170 gaaactaaaatggattaaaatactgaaagcctgaagatttcagca 214  Q
    ||||||||||||||||| | ||||||||||||| |||||| ||||    
T  12622906 gaaactaaaatggattatattactgaaagcctggagattttagca 12622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 20549822 - 20549850
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  20549822 attcagtgtaattatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 22602738 - 22602710
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  22602738 attcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 9678 - 9503
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||| |||||||||  |||||| ||||||||||||||||||    
T  9678 gaagaaactaaaatggattaaaatactaaaagcctgaagatttcagcacaagaagtgtcaaaatcccagctaaaagagtcagttacaagagtgccaaatg 9579  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9578 gccaaaacatgaacaaaatagaagactaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccat 9503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 43499397 - 43499223
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 265  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||||| ||    
T  43499397 aagaaactaaaatggattaaaatactgaaagcttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaagg 43499298  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43499297 ccaaaacaagaacaaaaaagaaggctaccctgttacataaatattcctaagcaaggtaaagggttcaaccaccat 43499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 340
Target Start/End: Original strand, 36651742 - 36651915
Alignment:
Q  169 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggc 266  Q
    |||||||||||||||||||||||  |||||  || |||||||||||||||||||  |||||||||||||||  |||||| ||||||||||||||||||||    
T  36651742 agaaactaaaatggattaaaatatcgaaagtttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcagttacaagagtgccaaatggc 36651841  T
Q  267 caaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  36651842 caaaacatgaacaaaatagaaggttaccatgttacataaatattcctaagcaaggtaaagggttcaaccaccat 36651915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 7743669 - 7743498
Alignment:
Q  171 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggcca 268  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||  ||||||   ||||||  |||||||||||||||||| |||| |||||    
T  7743669 aaactaaaatggattaaaaaactgaaagcatggagatttcagcacaaggagtgccaaaacttaagctaaaagagtcaattacaagagtgtcaaaaggcca 7743570  T
Q  269 aaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  7743569 aaacaagaacaaaaaagaaggctaccctgctacataaatattcctaaacaaggtaaagggttcaaccaccat 7743498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 42718669 - 42718496
Alignment:
Q  171 aaactaaaatggattaaaatactgaaagcctgaagatttcagcac-aaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatggcc 267  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| |||||||   |||||||| |||||  |||| ||||| |||||||||||| ||||    
T  42718669 aaactaaaatggattaaaaaactgaaagcctggagatttcagcaccaaggagtgctaaaaccccggctaaaagagttaattataagagtgccaaaaggcc 42718570  T
Q  268 aaaacatgaacaaaata-gaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||||| |||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  42718569 aaaacaagaacaaaaaaagaaggctaccccgttacataaatattcctaagcaaggtaaagggttcaaccaccat 42718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 9896507 - 9896680
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||| ||| || ||||||| || | |||| ||||||||||||  ||||||||||| |  || |||||||| ||||| |||||||      
T  9896507 gaagaaactaaaatggataaaattagtgaaagcttggaaatttaagcacaaggagtgccaaaaccccagatgaaaaagtcaattgcaagaatgccaaaac 9896606  T
Q  265 -gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
     ||||||||| ||||||||   ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  9896607 tgccaaaacaggaacaaaa---aaggctaccctgttacataaatattcccaagcaaggtaaagggttcaaccaccat 9896680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 340
Target Start/End: Original strand, 39059723 - 39059895
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtg-ccaaatg 264  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||  |||||||| ||||  |||||| |||||||||| || | ||| |    
T  39059723 aagaaactaaaatggattaaattactgaaagtctgaagaattcagcacaagcagtgccaaaacccaagctgaaagagttaattacaagaatgtcaaaacg 39059822  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| ||||||||   |||||||| |||||||||||||||||  | |||| ||||| ||||||||||||||    
T  39059823 gccaaaacaggaacaaaa---aaggctactctgttacataaatattcgcaggcaaggtaaatggttcaaccaccat 39059895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 48640837 - 48640782
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 222  Q
    ||||||||||||||||| || | ||||||| |||||||||||||||||||||||||    
T  48640837 gaagaaactaaaatggaatatattactgaacgcctgaagatttcagcacaaggagt 48640782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 37870649 - 37870715
Alignment:
Q  171 aaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  37870649 aaactaaaatggattatattactcaaagtctggagatttcagcacaaggagtgccaaaaccccagct 37870715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 37870776 - 37870832
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| ||| |||||||||| ||||||||  |||||| ||||||| ||||||||||||    
T  37870776 agaatgctgccctgttacaaaaatattctcaagcaaggtaaaggattcaaccaccat 37870832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 12410888 - 12410713
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||  ||||||||||||||||||||||| |    
T  12410888 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaag 12410789  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  12410788 gccaaaacaagaacaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccat 12410713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 12422948 - 12422773
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||  ||||||||||||||||||||||| |    
T  12422948 gaagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaag 12422849  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  12422848 gccaaaacaagaacaaaaaagaaggctaccttgttacataaatattcctaagcaaggtaaagggttcaaccaccat 12422773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 6764521 - 6764346
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||| |||||||  |||||||||||||||  ||||||||||||||||||||||| |    
T  6764521 gaagaaactaaaatggattaaaatactgaaagctcggagatttcagcataaggagtgtcaaaaccccagctaaaagagtcaattacaagagtgccaaaag 6764422  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| |||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  6764421 gccaaaacaagaacaaaaaataaggctaccctgctacataaatattcataagcaaggtaaagggttcaaccaccat 6764346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 37648065 - 37647891
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 265  Q
    |||||| ||||||||||||||||||||||||  || |||||||||||||||||||  ||||||| |||||||  |||||||||||||||||| |||| ||    
T  37648065 aagaaattaaaatggattaaaatactgaaagtttggagatttcagcacaaggagtgccaaaacctcagctaaaagagtcaattacaagagtgtcaaaagg 37647966  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  37647965 ccaaaacatgaacaaaaaagaaggctaccatgttacataaatattcctaagcaaggtaaagggtccaaccaccat 37647891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 27271740 - 27271565
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtg-ccaaatg 264  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||  |||||| ||||||  ||||||||||| ||| |||| | |||||    
T  27271740 aagaaactaaaatagattaaattactgaaagcctggagatttcagcacaaggagtgtcaaaactccagctgaaagagtcaattccaaaagtgtcaaaatg 27271641  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| ||| |||| ||||| ||| | |||||||||| |||||| |||||| ||||||||||||||||||||    
T  27271640 gccaaaacaggaataaaaaagaagactatcttgttacataagtattcccaagcaaggtaaagggttcaaccaccat 27271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 2702258 - 2702373
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgcc-aaatg 264  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||  ||||||||||||||||| |||| ||| |    
T  2702258 aagaaactaaaatggattaaaatactgaaagcctcaagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaatgccaaaacg 2702357  T
Q  265 gccaaaacatgaacaa 280  Q
    ||||||| ||||||||    
T  2702358 gccaaaatatgaacaa 2702373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 34394492 - 34394572
Alignment:
Q  175 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaag 253  Q
    ||||||| |||| | |||||||||||| ||||||||| ||||||||||  |||||||||||||  ||||||||||||||||    
T  34394492 taaaatgaattatattactgaaagcctaaagatttcaacacaaggagtgccaaaaccccagctgaaagagtcaattacaag 34394572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 11031765 - 11031704
Alignment:
Q  279 aaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| |||| ||| |||||||||| ||||||||| |||||| ||||| | ||||||||||||    
T  11031765 aaaaaagaatgctgccctgttacaaaaatattcccaagcaaggtaaatgattcaaccaccat 11031704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 11031898 - 11031810
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 254  Q
    ||||| |||||||| || | | || |||||| ||| ||||||||||| |||||||  |||||||||||||  ||||||||| |||||||    
T  11031898 aagaagctaaaatgaatgatattattgaaagtctggagatttcagcataaggagtgccaaaaccccagctgaaagagtcaaatacaaga 11031810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 5367223 - 5367251
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  5367223 attcagtgtaattatatgtgtcggtgtcg 5367251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 20242755 - 20242727
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  20242755 attcagtgtaattatatgtgtcggtgtcg 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 34691833 - 34691805
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  34691833 attcagtgtaattatatgtgtcggtgtcg 34691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 34714245 - 34714217
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  34714245 attcagtgtaattatatgtgtcggtgtcg 34714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 35056899 - 35056927
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  35056899 attcagtgtaattatatgtgtcggtgtcg 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 44860351 - 44860379
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  44860351 attcagtgtaattatatgtgtcggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 4532086 - 4532261
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||| |||  ||||||||||||||||| |||||||    
T  4532086 gaagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccaggtaaaagagtcaattacaagagtaccaaatg 4532185  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  4532186 gccaaaacatgaacaaaatagaaggataccttgttacataaatattcctaagcaaggtgaagggttcaaccaccat 4532261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 168 - 340
Target Start/End: Original strand, 51534478 - 51534652
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||||||| |||||  ||||||||||||||||||||||| ||    
T  51534478 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcacaaggagtgccaaaacccctgctaaaagagtcaattacaagagtgccaaaagg 51534577  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  51534578 ccaaaacatgaacaaaatagaatgctaccctattacataaatattcctaagcaaggtaaagggttcaatcaccat 51534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 33766456 - 33766348
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||| |  |||||||||||||||||||| |||| ||    
T  33766456 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccagttaaaagagtcaattacaagagtgtcaaaagg 33766357  T
Q  266 ccaaaacat 274  Q
    |||||||||    
T  33766356 ccaaaacat 33766348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 13182745 - 13182628
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatg 264  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||| | |||||||  |||||||||| ||  ||||||||||||||||| | ||||| |    
T  13182745 gaagaaattaaaatagattaaaatactgaaagcctggaaatttcagtataaggagtgccaaaaccccaactaaaagagtcaattacaagaattccaaaag 13182646  T
Q  265 gccaaaacatgaacaaaa 282  Q
    ||||||||| ||| ||||    
T  13182645 gccaaaacaagaagaaaa 13182628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 19227886 - 19227975
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 254  Q
    |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||| |||||||    
T  19227886 gaagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaaatacaaga 19227975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 34549464 - 34549394
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  34549464 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagct 34549394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 45432373 - 45432443
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||||    
T  45432373 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagct 45432443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 33936526 - 33936450
Alignment:
Q  175 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaatta 249  Q
    |||||||||||| | ||||||||| ||| ||||||||| |||||||||  ||||| |||||||  ||||||||||||    
T  33936526 taaaatggattatattactgaaagtctggagatttcaggacaaggagtgccaaaatcccagctgaaagagtcaatta 33936450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 34549333 - 34549277
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  34549333 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccat 34549277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 31911571 - 31911618
Alignment:
Q  190 tactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    ||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  31911571 tactgaaagcctgaagatttcagtacaaggagtgtcaaaacgccagct 31911618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 28756478 - 28756532
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 222  Q
    ||||| |||||||| | || | ||||||| |||||||||||||||||||||||||    
T  28756478 aagaagctaaaatgaaatatattactgaatgcctgaagatttcagcacaaggagt 28756532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 30749871 - 30749899
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  30749871 attcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 30771322 - 30771350
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  30771322 attcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 34371744 - 34371772
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  34371744 attcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 44482261 - 44482289
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  44482261 attcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 52903280 - 52903308
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  52903280 attcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 22639660 - 22639485
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    ||||||||||||||||||||||||||||||||  || |||||||| ||||||||||  ||||||||||| |||  |||||| |||||||||||||||||     
T  22639660 gaagaaactaaaatggattaaaatactgaaagtttggagatttcatcacaaggagtgccaaaaccccagttaaaagagtcagttacaagagtgccaaata 22639561  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22639560 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaggtaaatggttcaaccaccat 22639485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 19021489 - 19021316
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||| || ||||||| || ||||||||| | |||||||  |||||||||||||||  |||||||||||||||||||| || ||    
T  19021489 aagaaactaaaatggattaaattattgaaagcttggagatttcagtataaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccgaaagg 19021390  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||||||||||| | |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  19021389 ccaaaacatgaacaaaaaaaaaggctacccagttacat-aatattcctaagcaaggtaaagggttcaaccaccat 19021316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 39143220 - 39143349
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||  ||||| |  ||||||  ||||||||||||||||||||||| ||    
T  39143220 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcataaggagtgccaaaatcatagctaaaagagtcaattacaagagtgccaaaagg 39143319  T
Q  266 ccaaaacatgaacaaaatagaaggctaccc 295  Q
    ||||||||||||||||||||||||||||||    
T  39143320 ccaaaacatgaacaaaatagaaggctaccc 39143349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 6537176 - 6537003
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa-gagtcaattacaagagtgccaaat-gg 265  Q
    ||||||||||||||||| ||| ||||||||  ||| ||||||||||| |||||||  ||||| |  |||||| ||||||||||||| | || ||||  ||    
T  6537176 aagaaactaaaatggatgaaattactgaaactctggagatttcagcataaggagtgccaaaatctaagctaaagagtcaattacaaaaatgtcaaaaagg 6537077  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||  ||||||| | ||||||||| ||||| |||||||||   |||||| ||||||||||||||||||||    
T  6537076 ccaaaacagaaacaaaaaa-aaggctaccatgttatataaatattatcaagcaaggtaaagggttcaaccaccat 6537003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 22580397 - 22580459
Alignment:
Q  175 taaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    ||||||||| || | |||||||||||| |||||||||| ||||| |||  |||||||||||||    
T  22580397 taaaatggaatatattactgaaagcctaaagatttcagtacaagaagtgtcaaaaccccagct 22580459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 3966534 - 3966567
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcgcgtca 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  3966534 attcagtgtaattatatgtgtcggtgtcgtgtca 3966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 30502416 - 30502388
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  30502416 attcagtgtaattatatgtgtcggtgtcg 30502388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 30542759 - 30542731
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  30542759 attcagtgtaattatatgtgtcggtgtcg 30542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 24504155 - 24503980
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    ||||||||||||||||||||||| ||||||||| |  ||||||||||||||||| |  ||||||| |||||||  |||||||||||||| |||||||| |    
T  24504155 gaagaaactaaaatggattaaaaaactgaaagcatagagatttcagcacaaggaatgccaaaacctcagctaaaagagtcaattacaagtgtgccaaaag 24504056  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  24504055 gccaaaacaagaacaaaaaagaaggctaccctgttacataaatattcctaaacaaggtaaagggttcagccaccat 24503980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 8444262 - 8444434
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaatg 264  Q
    ||||||||||||||||||||||||| |   |||||  |||||||||||||| ||||  ||||||||||| |||  |||||||||||||||||||||||||    
T  8444262 gaagaaactaaaatggattaaaataat---agcctagagatttcagcacaaagagtgccaaaaccccagttaaaagagtcaattacaagagtgccaaatg 8444358  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |  ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||    
T  8444359 gttaaaacatgaacaaaatagaaggctatcctgttacataaatattcctaagcaaggtaaagagttcaacaaccat 8444434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 45548000 - 45547846
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaagagtgccaaatgg 265  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||| |        |    
T  45548000 aagaaactaaaatggattaaattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaat--------g 45547909  T
Q  266 ccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaaggg 328  Q
    |||||||| |||||||| |||| ||||||||||||| |||||||||| |||||| ||||||||    
T  45547908 ccaaaacaggaacaaaaaagaaagctaccctgttacgtaaatattcccaagcaaggtaaaggg 45547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 45540413 - 45540241
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagctaa--gagtcaattacaagagtgccaaat-g 264  Q
    |||||||||||| |||||||| |||||||||||   ||||||||||||||||| |  |||||||||| ||||  ||||||||| ||||| ||| |||  |    
T  45540413 aagaaactaaaacggattaaattactgaaagcc---agatttcagcacaaggaatgccaaaaccccaactaaaagagtcaattgcaagaatgctaaaacg 45540317  T
Q  265 gccaaaacatgaacaaaatagaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    ||||||| | |||||||| |||| |||||| |||||  |||||||||| |||||| ||||||||||||||||||||    
T  45540316 gccaaaataggaacaaaaaagaaagctaccatgttatgtaaatattcccaagcaaggtaaagggttcaaccaccat 45540241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 13089905 - 13089965
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccataaat 344  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  13089905 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccataaat 13089965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 25582580 - 25582631
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaag 218  Q
    ||||||||||||||||| || | ||||||| ||||||| |||||||||||||    
T  25582580 gaagaaactaaaatggaatatattactgaacgcctgaatatttcagcacaag 25582631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 4034300 - 4034365
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccc 232  Q
    |||||| |||||||| |||| | |||| |||| |||||||||| ||||||||||||  ||||||||    
T  4034300 gaagaagctaaaatgaattatattactaaaagtctgaagattttagcacaaggagtgccaaaaccc 4034365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 8847287 - 8847316
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcgc 129  Q
    ||||||||||||||||||||||||||||||    
T  8847287 attcagtgtaattatatgtgtcggtgtcgc 8847316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 13089765 - 13089818
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaagga 220  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||    
T  13089765 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaagga 13089818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 4034419 - 4034475
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||| | ||||||||||||    
T  4034419 agaatgctgccctgttacagaaatattcccaagcaaggtaaatgattcaaccaccat 4034475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 4786366 - 4786338
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  4786366 attcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 11927114 - 11927086
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  11927114 attcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 24581449 - 24581536
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaag 253  Q
    ||||| |||||||| |||| | || |||||| ||||| ||||||| | |||||||  |||||||||||||  |||| |||||||||||    
T  24581449 aagaagctaaaatgaattatattattgaaagtctgaatatttcagtataaggagtgtcaaaaccccagctgaaagaatcaattacaag 24581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 26902203 - 26902175
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  26902203 attcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 12912247 - 12912315
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 235  Q
    |||||| ||||||||||||| | |||| |||| ||| |||||||||||||||||||  |||||||||||    
T  12912247 gaagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgtcaaaaccccag 12912315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 6029430 - 6029362
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccag 235  Q
    |||||| |||||||||| || | ||||||||  |||||||||||||||||||||||  ||||| |||||    
T  6029430 gaagaagctaaaatggaatatattactgaaaatctgaagatttcagcacaaggagtgccaaaatcccag 6029362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 12912378 - 12912434
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| ||| |||||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  12912378 agaatgctgccctgttacaaaaatattcccaagcaaggtaaaggattcaaccaccat 12912434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 24394009 - 24393922
Alignment:
Q  169 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct--aagagtcaattacaaga 254  Q
    |||| ||||||| ||||| | |||| |||||||  |||||||||||||||||||  |||||||  ||||  |||||||||||||||||    
T  24394009 agaagctaaaattgattatattactaaaagccttgagatttcagcacaaggagtgccaaaaccttagctgaaagagtcaattacaaga 24393922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 165610 - 165542
Alignment:
Q  169 agaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||||||||||||||| | || | |||| ||  ||||||||||||||| |||  |||||||||||||    
T  165610 agaaactaaaatggattatattattaaaagtcttgagatttcagcacaagaagtgtcaaaaccccagct 165542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 7027273 - 7027301
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  7027273 attcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 7265621 - 7265593
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  7265621 attcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 9025522 - 9025494
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  9025522 attcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 21924963 - 21924935
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  21924963 attcagtgtaattatatgtgtcggtgtcg 21924935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 94981 - 94911
Alignment:
Q  167 gaagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    |||||| ||||||||||||| | || | |||||||| |||||||||||||||||||  ||||| |||||||    
T  94981 gaagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagct 94911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 1077 - 1008
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaacaaaaccccagct 237  Q
    ||||| ||||||||||||| | |||  |||| ||| ||||||||||| ||||||| ||||||||||||||    
T  1077 aagaagctaaaatggattatattacaaaaagtctggagatttcagcataaggagtgacaaaaccccagct 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 947 - 891
Alignment:
Q  284 agaaggctaccctgttacataaatattcctaagcaaagtaaagggttcaaccaccat 340  Q
    |||| ||| |||||||||| ||||||||| |||||| || |||| ||||||||||||    
T  947 agaatgctgccctgttacaaaaatattcccaagcaaggttaaggattcaaccaccat 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 15030167 - 15030113
Alignment:
Q  168 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagt 222  Q
    |||| |||||||| || || | |||||||||||||||||||||||||||| ||||    
T  15030167 aagagactaaaatagaatatattactgaaagcctgaagatttcagcacaaagagt 15030113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 7928481 - 7928509
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  7928481 attcagtgtaattatatgtgtcggtgtcg 7928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 8039863 - 8039835
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  8039863 attcagtgtaattatatgtgtcggtgtcg 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 20406458 - 20406426
Alignment:
Q  190 tactgaaagcctgaagatttcagcacaaggagt 222  Q
    ||||||| |||||||||||||||||||||||||    
T  20406458 tactgaacgcctgaagatttcagcacaaggagt 20406426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 25093533 - 25093561
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  25093533 attcagtgtaattatatgtgtcggtgtcg 25093561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 40993363 - 40993335
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  40993363 attcagtgtaattatatgtgtcggtgtcg 40993335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 9932 - 9961
Alignment:
Q  103 cagtgtaattatatgtgtcggtgtcgcgtc 132  Q
    ||||||||||||||||||||||||||||||    
T  9932 cagtgtaattatatgtgtcggtgtcgcgtc 9961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 9775 - 9747
Alignment:
Q  100 attcagtgtaattatatgtgtcggtgtcg 128  Q
    |||||||||||||||||||||||||||||    
T  9775 attcagtgtaattatatgtgtcggtgtcg 9747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University