View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_18 (Length: 396)
Name: NF20078_high_18
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 33489091 - 33488944
Alignment:
| Q |
212 |
gaccataattgaaacgaagtcaagttcacaatttttctttaggtaaaatataaagaaagtgcgaatttaaatggaatccatatccatatttccttgtggg |
311 |
Q |
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| T |
33489091 |
gaccataattgaaaggaagtcaagttcacaatatttctttaggtaaaatataaagaaagtacgaatttaaatggaatccatatccatatttccttgtggg |
33488992 |
T |
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| Q |
312 |
attctagcatttgaaggtagaacagttctaggactagtcctagaatta |
359 |
Q |
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| T |
33488991 |
attctagcatttgaaggtagcaaagttctaggactagtcctagaatta |
33488944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 33489247 - 33489085
Alignment:
| Q |
20 |
tgcagtacatcatgagtgagtaagaaaattaagtacaacaaatcattttatatccttagataaaatgtcatctgttagaatatcaagtataataataaat |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
33489247 |
tgcactacatcatgagtgagtaagaaaattaagtacatcaaatcattttatgtccttagataaaatgttatct-ttagaatatcaagtataataataaat |
33489149 |
T |
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| Q |
120 |
gttatctgcgatactaaacttggcattgctacttgcatgcatgtacactcatagtttgaccata |
183 |
Q |
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| T |
33489148 |
gttatctaagatactaaacttggcattgctacttgaatgcatgtacactcatagtttgaccata |
33489085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 1610936 - 1611011
Alignment:
| Q |
284 |
ggaatccatatccatatttccttgtgggattctagcatttgaaggtagaacagttctaggactagtcctagaatta |
359 |
Q |
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| T |
1610936 |
ggaatccatatctatattttcttgtgggattctagcatttgaaggtggcacagctctaggattaatcctagaatta |
1611011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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