View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_19 (Length: 389)
Name: NF20078_high_19
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 160 - 379
Target Start/End: Original strand, 45147613 - 45147831
Alignment:
| Q |
160 |
gaagcgaacaactctttataatgattctgaannnnnnnagggactttggggaggtatgatatgtggaattctcctccagaccttgctgctctcggggata |
259 |
Q |
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| T |
45147613 |
gaagcgaacaactctttctaatgattctgaatttttttagggactttggggaggtatgatatgtggaattctcctccagaccttgctgctctcggggata |
45147712 |
T |
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| Q |
260 |
ctttacaaaaccaattggaacaaagaggtaggcaatacttctcattctaaaactcatgttggattttctcgcttgactacaacagaaaaatgatattgat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45147713 |
ctttacaaaaccaattggaacaaagaggtaggcaatacttctcattctaagactcatgttggattttctcgcttgactacaacagaaaaatg-tattgat |
45147811 |
T |
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| Q |
360 |
caccctttttctatcctatg |
379 |
Q |
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|||||||||||||||||||| |
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| T |
45147812 |
caccctttttctatcctatg |
45147831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 45147472 - 45147586
Alignment:
| Q |
19 |
acttgtttgctgttgagtgaaaaatgttaatgtcatgaatggttcctgctttaatgcctctttttgataaacatttctatccaaagactcattgactgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45147472 |
acttgtttgctgttgagtgaaaaatgttaatgtcatgaatggttcctgctttaatgcctctttttgataaacatttctatccaaagactcattgaccgtt |
45147571 |
T |
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| Q |
119 |
ttataggtagaagat |
133 |
Q |
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| T |
45147572 |
ttataggtagaagat |
45147586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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