View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_23 (Length: 358)
Name: NF20078_high_23
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 135251 - 135605
Alignment:
| Q |
2 |
ctcggtcgttctttcatctctggttttgagaagagcccatcttctttctttaatgcatgaatttctcaaagattatttttgcctattcttgaagcttctc |
101 |
Q |
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| T |
135251 |
ctcggtcgttctttcatctctggttttgagaagaacccatcttctttctttaatgcatgaatttctcaaagattatttttgcctattcttgaagcttctc |
135350 |
T |
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| Q |
102 |
cttaccatgaaacaatctggcgtagttgcccatttcaagatcttgtgcattagatatgaagatcatttgacagtcaatttattttttgtgactatgactt |
201 |
Q |
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| T |
135351 |
cttaccatgaaacaatctggcgtagttgcccatttcaagatcttgtgcattagatatgaagatcatttgacagtcaatttattttttgtgactatgactt |
135450 |
T |
|
| Q |
202 |
tataaattttgatgaaggtaataagaattctgtgtaggactttattaattaggagggatgcaattcctttttacactcgaaatttgatacaaaatgtcca |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
135451 |
tataaattttgatgaaggtaataagaattctgtgtaggactttattaattaggagggatgcaattcctttttacaatcgaaatttgatacaaaatgtcca |
135550 |
T |
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| Q |
302 |
aacatccatttgttcacatatttatactcttctttttacttttcaatattctatt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135551 |
aacatccatttgttcacatatttatactcttctttttacttttcaatattctatt |
135605 |
T |
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