View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_26 (Length: 332)
Name: NF20078_high_26
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 4420928 - 4420628
Alignment:
| Q |
13 |
aaaatctatgtaagtttgctataactcaggtgtatctagaatcagaaaaatgataaaatctagaacgatgttgaaattcctccatgtttaacggtgcatt |
112 |
Q |
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| T |
4420928 |
aaaatctatgtaagtttgctataactcgggtgtatctagaatcagaaaaatgataaattctagaacgatgttgaaattcctccatgtctgacggtgcatt |
4420829 |
T |
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| Q |
113 |
tggtgcatgatacttgtatcgagtggaagaatgtgtgtattcgaagagaacaacatgaagcattgtaagatgcctcatcttcaagctctaatcagataga |
212 |
Q |
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||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4420828 |
tggtgcatgatacttgtctcgaatggaagaatgtgt--attcgaagagaacaacatgaagcattgtaagatgcctcatcttcaagctctaatcaaataga |
4420731 |
T |
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| Q |
213 |
tgttgataagattcgttggcaatgacttgaagcaggagcgttgaagtgcaatgtggcttggaaatctttaaggagcaaggatggtatggtatagggatgt |
312 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4420730 |
tgttgataagatttgttggcaatgacctgaagcaggagcgttgaagtgcaatgtggcttggaaatctttaaggagcaaggatggtatggtatagggatgt |
4420631 |
T |
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| Q |
313 |
atc |
315 |
Q |
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||| |
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| T |
4420630 |
atc |
4420628 |
T |
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