View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_31 (Length: 297)
Name: NF20078_high_31
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 29009022 - 29008744
Alignment:
| Q |
19 |
gttacggtgttatattcattcaattagatgaagaatttgaatcgaagctatagttaactctgtgnnnnnnnnnnnnnnnnnnnnnnnntaggaaaatgag |
118 |
Q |
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| T |
29009022 |
gttacggtgttgtattcattcgattagatgaagaatttgaatcgaagctatagttaactctgtgtttttgattttttggtttgatttgtaggaaaatgag |
29008923 |
T |
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| Q |
119 |
gccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcaattctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcc |
218 |
Q |
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| T |
29008922 |
gccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcgattctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcc |
29008823 |
T |
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| Q |
219 |
tgggatcttgaatccaatatgcaggtttgggcttccactgagagcttcaacgtcggcgacgatctcggtacgtttcttc |
297 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008822 |
tgggatcttgaatccaatatgcaggattgggcttccactgagagcttcaacgtcggcgacgatctcggtacgtttcttc |
29008744 |
T |
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