View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_4 (Length: 509)
Name: NF20078_high_4
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_4 |
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| [»] scaffold0581 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 25617621 - 25617155
Alignment:
| Q |
1 |
agaagacacttatagtagtagaactgactctctagctcaaggtgaatttcaagccagttaaagcgtgaaaggtaatgaaaaatgttttgatctaataaac |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25617621 |
agaagacacttatagtagtagaactgactctcttgctcaagctgaatttcaagccagttaaagcgtgaaaggtgatgaaaaatgttttgatctaataaac |
25617522 |
T |
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| Q |
101 |
ctctttgtgggcacaaatcataactaaaatttgacagtgatggtgattttatagatcatatataatttcagtacccttactgcaattgagtgttcaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25617521 |
ctctttgtgggcacaaatcataactaaaatgtgacagtgatggtgattttatagatcatatataatttcagtaccctt-ctgcaattgagtgttcaagtc |
25617423 |
T |
|
| Q |
201 |
tccttaagcactaattggacgaaagatggtacggcaaagtgttatatgattggaaatgtgtaccttcttttgtccacctactgcttgagcaaaattgaat |
300 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25617422 |
tccttaagcactcattggatgaaagatggtacggcaaagtgttatatgattggaaacgtgtaccttctttcgtccacctactgcttgagcaaaattgaat |
25617323 |
T |
|
| Q |
301 |
actatgttacaatatggatactactaatatttccaatctataaaatcaccatttttgtcactctttcagtatg-ttttgtgtccaccaagagatttatat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25617322 |
actatgttacaatatggatactactaatatttccaatctatataatcaccatttttgtcactctttcagtatgtttttgtgtccaccaagagatttatat |
25617223 |
T |
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| Q |
400 |
gaatatactcttaaactgctaaggtttgtgtaagttgtccaaactgaggccaaagagaaaataaaaga |
467 |
Q |
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| T |
25617222 |
gaatatactcttaaactgctaaggtttgtgtaagttgtccaaactgaggccaaagagaaaataaaaga |
25617155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 238 - 467
Target Start/End: Original strand, 5525 - 5754
Alignment:
| Q |
238 |
agtgttatatgattggaaatgtgtaccttcttttgtccacctactgcttgagcaaaattgaatactatgttacaatatggatactactaatatttccaat |
337 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525 |
agtgttatatgattggaaacgtgtaccttcttttgtccacctactgcttgagcaaaattgaatactatgttacaatatggatactactaatatttccaat |
5624 |
T |
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| Q |
338 |
ctataaaatcaccatttttgtcactctttcagtatgttttgtgtccaccaagagatttatatgaatatactcttaaactgctaaggtttgtgtaagttgt |
437 |
Q |
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| T |
5625 |
ctataagatcaccatttttgtcactctttcagtatgttttgtgtccaccaagagatttatatgaatatactcttaaactgctaaggtttgtgtaagttgt |
5724 |
T |
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| Q |
438 |
ccaaactgaggccaaagagaaaataaaaga |
467 |
Q |
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| T |
5725 |
ccaaactgaggccaaagagaaaataaaaga |
5754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 5937 - 5889
Alignment:
| Q |
336 |
atctataaaatcaccatttttgtcactctttcagtatgttttgtgtcca |
384 |
Q |
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||||||||||||| |||| |||||||| || ||||||| |||||||||| |
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| T |
5937 |
atctataaaatcatcattattgtcacttttacagtatgatttgtgtcca |
5889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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