View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_high_43 (Length: 240)
Name: NF20078_high_43
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 27205869 - 27206077
Alignment:
| Q |
16 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
115 |
Q |
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| T |
27205869 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggcggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
27205968 |
T |
|
| Q |
116 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattattttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27205969 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactattttt |
27206068 |
T |
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| Q |
216 |
gtttgaaat |
224 |
Q |
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||||||||| |
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| T |
27206069 |
gtttgaaat |
27206077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 31094595 - 31094376
Alignment:
| Q |
13 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagag |
112 |
Q |
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| T |
31094595 |
aagaatatcaccaaaagccaaggtgatgtaaaaaagggagttaatttcgcttatgccggttcaactgcacttgacatcgaatatttcagtggtagtggag |
31094496 |
T |
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| Q |
113 |
tcatta---------------actctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaac |
197 |
Q |
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| T |
31094495 |
tctctacaccacagaaagataactcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaac |
31094396 |
T |
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| Q |
198 |
tccctgcatattatttttgt |
217 |
Q |
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| T |
31094395 |
tccttgcttgttatttttgt |
31094376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 13003795 - 13003579
Alignment:
| Q |
13 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaagg---tggta |
109 |
Q |
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| T |
13003795 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcttatgccggttcaactgcacttgatgtcaaatattttagtggcattagtg |
13003696 |
T |
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| Q |
110 |
gagtcatt---------aactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactcc |
200 |
Q |
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| T |
13003695 |
gagtcagtgcaccaaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatcc |
13003596 |
T |
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| Q |
201 |
ctgcatattatttttgt |
217 |
Q |
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| T |
13003595 |
ttgcatgttatttttgt |
13003579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 31251921 - 31252007
Alignment:
| Q |
131 |
tgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttgt |
217 |
Q |
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| T |
31251921 |
tgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatttttgt |
31252007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 31251791 - 31251876
Alignment:
| Q |
13 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattattt |
98 |
Q |
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| T |
31251791 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcctatgccggttcaactgcacttgatgtcaaatattt |
31251876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 27228710 - 27228810
Alignment:
| Q |
117 |
taactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttg |
216 |
Q |
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|||||| || ||| |||||||||| ||||||||||| | ||||| || |||||||||| | |||||||||||||| ||||| | ||| ||||||||||| |
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| T |
27228710 |
taactcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttg |
27228809 |
T |
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| Q |
217 |
t |
217 |
Q |
| |
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| |
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| T |
27228810 |
t |
27228810 |
T |
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