View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_high_5 (Length: 488)
Name: NF20078_high_5
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 3768654 - 3768194
Alignment:
| Q |
12 |
atgaaaatagttctttgcaggggatcaaggattcagtttcacattactcgccttggattctaagttaattaccagtagtaaaagtaaaaatgtcagagta |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
3768654 |
atgaaaatagttctttgcaggagatcaaggattcagtttcacattactcgccttggagtctcagttaattactagtagtaaaagtaaaaatatcagagtt |
3768555 |
T |
|
| Q |
112 |
ctaatgattttatttatctattacaggaatttataccaaagatcaagaaattcagctctctccaaatatgccaaagatggacacaaaaaacgttccatgg |
211 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768554 |
ctaatgatttaatttttctattacaggaatttataccaaagatcaagaaattcagctctctccaaatatgccaaagatggacacaaaaaacgttccatgg |
3768455 |
T |
|
| Q |
212 |
cggacctttgacaagatcatatttgatcatcttgcacagcagatgcaaaccatgaagttaggacattggtggctttgcaacacaacttatgatttagagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768454 |
cggacctttgacaagatcatatttgatcatcttgcacaacagatgcaaaccatgaagttaggacattggtggctttgcaacacaacttatgatttagagc |
3768355 |
T |
|
| Q |
312 |
atgcaacattctccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaacaaaagttcattttggcaagaagacatgacttcctt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3768354 |
atgcaacattctccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaacaaaagttcattctggcaagaagacatgacttcctt |
3768255 |
T |
|
| Q |
412 |
agagtggctagataagcaaccacctcaatcggtcgtatatgtttccttcggtagtttggca |
472 |
Q |
| |
|
||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768254 |
agattggctagataagcaaccatcacaatcggtcgtatatgtttccttcggtagtttggca |
3768194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 155 - 471
Target Start/End: Complemental strand, 3780789 - 3780473
Alignment:
| Q |
155 |
caagaaattcagctctctccaaatatgccaaagatggacacaaaaaacgttccatggcggacctttgacaagatcatatttgatcatcttgcacagcaga |
254 |
Q |
| |
|
||||||||||| |||| |||||||||||| | ||| ||||| |||| |||||||| | || ||||||||| |||||||| || || |||| ||| |
|
|
| T |
3780789 |
caagaaattcaactctttccaaatatgcctatgatagacactgcaaactttccatggagagcccatgacaagattttatttgattatatttcacaagaga |
3780690 |
T |
|
| Q |
255 |
tgcaaaccatgaagttaggacattggtggctttgcaacacaacttatgatttagagcatgcaacattctccatctcaccaaagttcctaccaattggccc |
354 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||||||||||| || | |||||||||||||| ||||| ||||||||||| ||||||||||| || |
|
|
| T |
3780689 |
tgcaagccatgaagtttggagattggtggctttgcaacacaacttataatctcgagcatgcaacattttccatatcaccaaagtttctaccaattggtcc |
3780590 |
T |
|
| Q |
355 |
attgatggaaaatgatagcaacaaaagttcattttggcaagaagacatgacttccttagagtggctagataagcaaccacctcaatcggtcgtatatgtt |
454 |
Q |
| |
|
||| ||| || || ||||| ||||||||| |||||||||||| || | ||||| ||||| ||| | | ||||||||||| |||| ||||||| |
|
|
| T |
3780589 |
attcatgtcaatcgaagacaacacaagttcattctggcaagaagacgcaacatgtttagattggctcgatcaatatccacctcaatccgtcgcatatgtt |
3780490 |
T |
|
| Q |
455 |
tccttcggtagtttggc |
471 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
3780489 |
tcctttggtagtttggc |
3780473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 278 - 470
Target Start/End: Complemental strand, 3789724 - 3789532
Alignment:
| Q |
278 |
tggtggctttgcaacacaacttatgatttagagcatgcaacattctccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaaca |
377 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||| || ||| ||||| ||||||||||||||||||||||| ||||||||||||| | | | ||||| |
|
|
| T |
3789724 |
tggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaaca |
3789625 |
T |
|
| Q |
378 |
aaagttcattttggcaagaagacatgacttccttagagtggctagataagcaaccacctcaatcggtcgtatatgtttccttcggtagtttgg |
470 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||| ||| ||||||| ||| |||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
3789624 |
aaagttcattatggcaagaagactcaacttgcttagaatggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttgg |
3789532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 278 - 470
Target Start/End: Original strand, 3800383 - 3800575
Alignment:
| Q |
278 |
tggtggctttgcaacacaacttatgatttagagcatgcaacattctccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaaca |
377 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||| || ||| ||||| ||||||||||||||||||||||| ||||||||||||| | | | ||||| |
|
|
| T |
3800383 |
tggtggctttgcaacactacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaaca |
3800482 |
T |
|
| Q |
378 |
aaagttcattttggcaagaagacatgacttccttagagtggctagataagcaaccacctcaatcggtcgtatatgtttccttcggtagtttgg |
470 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||| ||| ||||||| ||| |||||||||| ||| ||||||||||||| ||||| |||| |
|
|
| T |
3800483 |
aaagttcattatggcaagaagactcaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttgg |
3800575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University