View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_high_7 (Length: 462)
Name: NF20078_high_7
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 317 - 441
Target Start/End: Original strand, 10667228 - 10667352
Alignment:
| Q |
317 |
gattctaaatggaaatttgatcattattttctcaacttccctcctttcaccaaatttcttaaaacatataggcaaagaaatttcagttttctgtatttta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10667228 |
gattctaaatggaaatttgatcattattttcttaacttccctcctttcaccaaatttcttgaaacatataggtgaagaaatttcagttttctgtatttta |
10667327 |
T |
|
| Q |
417 |
taagtttgtttatcaataaactcct |
441 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10667328 |
taagtttgtttatcaataaactcct |
10667352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 317 - 441
Target Start/End: Original strand, 10520986 - 10521110
Alignment:
| Q |
317 |
gattctaaatggaaatttgatcattattttctcaacttccctcctttcaccaaatttcttaaaacatataggcaaagaaatttcagttttctgtatttta |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10520986 |
gattctaaatggaattttgatcattattttcttaacttccctcctttcaccaaatttcttgaaacatataggtgaagaaatttcagttttctgtatttta |
10521085 |
T |
|
| Q |
417 |
taagtttgtttatcaataaactcct |
441 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
10521086 |
taaggttgtttatcaataaactcct |
10521110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 10371042 - 10371014
Alignment:
| Q |
9 |
gaagaatatcatcattagaaagaaataat |
37 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10371042 |
gaagaatatcatcattagaaagaaataat |
10371014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University