View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_10 (Length: 435)

Name: NF20078_low_10
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_10
NF20078_low_10
[»] chr2 (2 HSPs)
chr2 (7-419)||(12944032-12944444)
chr2 (192-229)||(45075703-45075740)
[»] chr8 (5 HSPs)
chr8 (183-237)||(13530997-13531051)
chr8 (183-237)||(13620536-13620590)
chr8 (179-255)||(37147868-37147944)
chr8 (192-234)||(1042794-1042836)
chr8 (185-223)||(36985951-36985989)
[»] chr6 (2 HSPs)
chr6 (180-234)||(4011242-4011296)
chr6 (196-255)||(25407903-25407962)
[»] chr4 (1 HSPs)
chr4 (179-229)||(12192656-12192706)
[»] chr5 (1 HSPs)
chr5 (179-238)||(21192254-21192313)
[»] chr1 (3 HSPs)
chr1 (187-238)||(9641842-9641893)
chr1 (179-229)||(3755577-3755627)
chr1 (196-238)||(26506800-26506842)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 12944444 - 12944032
Alignment:
Q  7 tagattatacttggagattttatgtcttggtctaatgatgaaccttatgaattaacatattatttttcatttgttcgttattggtttgtaataatattaa 106  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12944444 tagataatacttggagattttatatcttggtctaatgatgaaccttatgaattaacatattatttttcatttattcgttattggtttgtaataatattaa 12944345  T
Q  107 gttggatgatgctaacatttgccctatggacatactatgagataaggttagtaaatatttattatnnnnnnntaattttcaaaagtttaagaaataaatt 206  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  12944344 gttggatgatgctaacatttgtcctaaggacatactatgagataaggttagtaaatatttattataaaaaaataattttcaaaagtttaagaaataaatt 12944245  T
Q  207 agcacaattttcaatacataattcctatctttagtaccttggcatgtgctttgcatttccctattaagttatattatattgag----agttggaaaaggt 302  Q
    ||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    ||||||||| |||    
T  12944244 agcacaattttcaatacataatttctatctctagtatcttagcatgtgctttgcatttccctattaagttttattatattgagatctagttggaaatggt 12944145  T
Q  303 taaggagatgggtgatatacttgnnnnnnnnnnnnnnnncttttcaaatttggacaacaataacttttttgggcgttgagttacgattcttgaagtgatt 402  Q
    |||||||||||||||||||||||                  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  12944144 taaggagatgggtgatatacttgtttgtttttttttc----tttcaaatttggacaacaatgacttttttgggcgttgagttacgattctttaagtgatt 12944049  T
Q  403 ataacttgaatagagtg 419  Q
    |||||||||||||||||    
T  12944048 ataacttgaatagagtg 12944032  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 45075740 - 45075703
Alignment:
Q  192 tttaagaaataaattagcacaattttcaatacataatt 229  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  45075740 tttaagcaataaattaacacaattttcaatacataatt 45075703  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 13531051 - 13530997
Alignment:
Q  183 tttcaaaagtttaagaaataaattagcacaattttcaatacataattcctatctt 237  Q
    |||||||| ||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  13531051 tttcaaaattttgagaaataaattggcataattttcaatacataatttctatctt 13530997  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 13620590 - 13620536
Alignment:
Q  183 tttcaaaagtttaagaaataaattagcacaattttcaatacataattcctatctt 237  Q
    |||||||| ||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  13620590 tttcaaaattttgagaaataaattggcataattttcaatacataatttctatctt 13620536  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 37147868 - 37147944
Alignment:
Q  179 taattttcaaaagtttaagaaataaattagcacaattttcaatacataattcctatctttagtaccttggcatgtgc 255  Q
    ||||| |||||||||| |||||||||||  |||||||| |||||  ||||| | ||||||||||| ||| |||||||    
T  37147868 taattatcaaaagtttgagaaataaattgccacaatttccaatatgtaatttccatctttagtacgttgacatgtgc 37147944  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 1042794 - 1042836
Alignment:
Q  192 tttaagaaataaattagcacaattttcaatacataattcctat 234  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  1042794 tttaagcaataaattaacacaattttcaatacataatttctat 1042836  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 36985989 - 36985951
Alignment:
Q  185 tcaaaagtttaagaaataaattagcacaattttcaatac 223  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  36985989 tcaaaagtttaagaaataaattgacacaattttcaatac 36985951  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4011296 - 4011242
Alignment:
Q  180 aattttcaaaagtttaagaaataaattagcacaattttcaatacataattcctat 234  Q
    |||| ||||||| |||||||||||||| ||||||||| |||||||||||| ||||    
T  4011296 aattatcaaaagattaagaaataaatttgcacaatttccaatacataatttctat 4011242  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 25407962 - 25407903
Alignment:
Q  196 agaaataaattagcacaattttcaatacataattcctatctttagtaccttggcatgtgc 255  Q
    ||||||||||| |||| |||||||| |||||||| |||||||||| |||||  |||||||    
T  25407962 agaaataaattggcactattttcaacacataatttctatctttagcaccttaacatgtgc 25407903  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 12192656 - 12192706
Alignment:
Q  179 taattttcaaaagtttaagaaataaattagcacaattttcaatacataatt 229  Q
    |||||||||| | ||||||||||||||| | ||||||||||||||||||||    
T  12192656 taattttcaacattttaagaaataaattcgtacaattttcaatacataatt 12192706  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 21192313 - 21192254
Alignment:
Q  179 taattttcaaaagtttaagaaataaattagcacaattttcaatacataattcctatcttt 238  Q
    ||||| |||||||||| ||||||||| | ||||||||| |||||||||||| ||| ||||    
T  21192313 taattatcaaaagtttgagaaataaactggcacaatttccaatacataatttctaccttt 21192254  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 9641842 - 9641893
Alignment:
Q  187 aaaagtttaagaaataaattagcacaattttcaatacataattcctatcttt 238  Q
    |||| |||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  9641842 aaaattttatgaaataaattagcacaatttccaatacttaatttctatcttt 9641893  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 3755627 - 3755577
Alignment:
Q  179 taattttcaaaagtttaagaaataaattagcacaattttcaatacataatt 229  Q
    ||||| |||||||||| | |||||||||  |||||||||||||||||||||    
T  3755627 taattatcaaaagtttgaaaaataaatttacacaattttcaatacataatt 3755577  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 26506842 - 26506800
Alignment:
Q  196 agaaataaattagcacaattttcaatacataattcctatcttt 238  Q
    ||||||||||| ||||||||||||||||||||||  |||||||    
T  26506842 agaaataaattggcacaattttcaatacataatttttatcttt 26506800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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