View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_12 (Length: 419)
Name: NF20078_low_12
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 382171 - 381984
Alignment:
| Q |
1 |
ttgaaattagagtttctaaattggtgcatgtttgttttctccaaaaaggatggaaaaaacatgcttagcagttagcactatattatgcttatttgtcatg |
100 |
Q |
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| T |
382171 |
ttgaaattagagtttctaaattggtgcatgtttgttttctccacaaaggatggaaaaaacatgcttagca-------ctatattatgcttatttgtcat- |
382080 |
T |
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| Q |
101 |
tcatatcttttgaaccttttcatgacttggttgataaacctctattactttcccagtaacagttgattcattcaaatgtgtagtctttaaactctctcca |
200 |
Q |
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| T |
382079 |
----atcttttgaaccttttcatgacttggttgataaacctctactactttcccagtaacagttgattcattcaaatgtgtagtctttaaattctctcca |
381984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 392
Target Start/End: Original strand, 41984389 - 41984491
Alignment:
| Q |
295 |
ttagctttcatgaagatg-aatgtgatacataaatactc----aatattaattttatgctcctcaatttaccagttctgtttgcaaagttagtccaaatt |
389 |
Q |
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|||||||||||||||| | |||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||| | || ||||||||| |
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| T |
41984389 |
ttagctttcatgaagagggaatgcgatacataagtactcttgtaatattaattttatgctcctcaatttaccggttctgttcgcacaattcgtccaaatt |
41984488 |
T |
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| Q |
390 |
tta |
392 |
Q |
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||| |
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| T |
41984489 |
tta |
41984491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 38287927 - 38287963
Alignment:
| Q |
226 |
ttagtgagatatagttagagatttgttagtattgatt |
262 |
Q |
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| T |
38287927 |
ttagttagatatagttaaagatttgttagtattgatt |
38287963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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