View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_15 (Length: 410)

Name: NF20078_low_15
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_15
NF20078_low_15
[»] chr4 (6 HSPs)
chr4 (14-403)||(4624579-4624968)
chr4 (14-158)||(4600686-4600830)
chr4 (150-244)||(4600411-4600505)
chr4 (27-170)||(25018018-25018161)
chr4 (26-127)||(25039175-25039276)
chr4 (172-250)||(25039059-25039137)
[»] chr2 (3 HSPs)
chr2 (42-277)||(18803714-18803949)
chr2 (314-359)||(33413657-33413702)
chr2 (315-359)||(28028183-28028227)
[»] chr6 (2 HSPs)
chr6 (321-392)||(34486289-34486360)
chr6 (316-388)||(31799316-31799388)
[»] chr1 (1 HSPs)
chr1 (317-376)||(31478125-31478184)
[»] scaffold0330 (1 HSPs)
scaffold0330 (317-387)||(16982-17052)
[»] scaffold0240 (1 HSPs)
scaffold0240 (317-387)||(1000-1070)
[»] chr7 (1 HSPs)
chr7 (317-359)||(37749243-37749285)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 403
Target Start/End: Complemental strand, 4624968 - 4624579
Alignment:
Q  14 cactaacaactctaacaaatatgcagctggaaaactaagtgacggtgtaaaccaagcaggaatcatattttacaacaacctgatcaatgagctacttgct 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  4624968 cactaacaactctaacaaatatgcagctggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttgct 4624869  T
Q  114 aatggtaatacataataatccatactttattagtatatcatattcatgatgttcatattcataataacataaattgatggaattattgatccaggtcaaa 213  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4624868 aatggtaatgcataatattccatactttattagtatatcatattcatgatgttcatactcataataatataaattgatggaattattgatccaggtcaaa 4624769  T
Q  214 taccatacataaccctttttcattgggatcttccccaggccttacaagatgattatggaggctttgtcagtgagaatattaggtaagtatcttgacacaa 313  Q
    |||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4624768 taccatatgtgaccctttttcattgggatcttccccaggccttacaagatgattatggaggctttgtcagcgagaatattaggtaagtatcgtgacacaa 4624669  T
Q  314 atttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactgagattagaataatct 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  4624668 atttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaactttatgtactgagattagaatgatct 4624579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 4600830 - 4600686
Alignment:
Q  14 cactaacaactctaacaaatatgcagctggaaaactaagtgacggtgtaaaccaagcaggaatcatattttacaacaacctgatcaatgagctacttgct 113  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||| |||||||||||| |||||  ||||||||||||||    
T  4600830 cactgacaactctaacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttgct 4600731  T
Q  114 aatggtaatacataataatccatactttattagtatatcatattc 158  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||    
T  4600730 aatggtaatacataataatacataatttattagtacatcatattc 4600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 4600505 - 4600411
Alignment:
Q  150 atcatattcatgatgttcatattcataataacataaattgatggaattattgatccaggtcaaataccatacataaccctttttcattgggatct 244  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4600505 atcatattcgtgatgttcatgctcataataatataaattgatggaattattgatccaggtcaaataccatatgtaaccctttttcattgggatct 4600411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 25018161 - 25018018
Alignment:
Q  27 aacaaatatgcagctggaaaactaagtgacggtgtaaaccaagcaggaatcatattttacaacaacctgatcaatgagctacttgctaatggtaatacat 126  Q
    |||||||||||||  |||||| ||||||  ||| |||| |||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||| |||    
T  25018161 aacaaatatgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgcat 25018062  T
Q  127 aataatccatactttattagtatatcatattcatgatgttcata 170  Q
    |||||| ||| ||| |  |||||||||||||||||| |||||||    
T  25018061 aataatacatgcttcacaagtatatcatattcatgaagttcata 25018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 25039276 - 25039175
Alignment:
Q  26 taacaaatatgcagctggaaaactaagtgacggtgtaaaccaagcaggaatcatattttacaacaacctgatcaatgagctacttgctaatggtaataca 125  Q
    ||||||||||||||  |||||| ||||||| ||| ||||||||| |||||||| || ||||||||||||||||||||| ||||||| |||||||||| ||    
T  25039276 taacaaatatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaatgca 25039177  T
Q  126 ta 127  Q
    ||    
T  25039176 ta 25039175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 25039137 - 25039059
Alignment:
Q  172 tcataataacataaattgatggaattattgatccaggtcaaataccatacataaccctttttcattgggatcttcccca 250  Q
    ||||| ||| ||||||||||||| |||||||||||||||   ||||||   | |||||||| |||||||||||||||||    
T  25039137 tcatagtaatataaattgatggacttattgatccaggtctggtaccatttgtgacccttttccattgggatcttcccca 25039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 18803714 - 18803949
Alignment:
Q  42 ggaaaactaagtgacggtgtaaaccaagcaggaatcatattttacaacaacctgatcaatgagctacttgctaatggtaatacataataatccatacttt 141  Q
    |||||||| |||| ||||  |||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  18803714 ggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgataatggtaatgcataataatccctacttt 18803813  T
Q  142 attagtatatcatattcatgatgttcatattcataataacataaattgatggaattattgatccaggtcaaataccatacataaccctttttcattggga 241  Q
    |||||||||| |||||||||||||||||| ||||| ||| |||||||||  || ||||||||||||||| | |||||||  | ||||||||||||| |||    
T  18803814 attagtatataatattcatgatgttcataatcatagtaatataaattgactgagttattgatccaggtctagtaccatatgtgaccctttttcattcgga 18803913  T
Q  242 tcttccccaggccttacaagatgattatggaggctt 277  Q
    | |||||||| ||||||  ||||| ||||| |||||    
T  18803914 ttttccccagaccttacttgatgagtatggtggctt 18803949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 33413657 - 33413702
Alignment:
Q  314 atttgatagaaaatgcacatacagaattgcgagaaagattagaatg 359  Q
    ||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  33413657 atttgatagaacatgcacatacataattgagagaaagaatagaatg 33413702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 28028227 - 28028183
Alignment:
Q  315 tttgatagaaaatgcacatacagaattgcgagaaagattagaatg 359  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||    
T  28028227 tttgatagaacatgcacatacataattgagagaaatattagaatg 28028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 34486289 - 34486360
Alignment:
Q  321 agaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactgagat 392  Q
    |||| ||||||||||| ||| | |||||||||||||||||| || ||||||||  |||||||||||||||||    
T  34486289 agaacatgcacatacataatcgagagaaagattagaatgttctgaatacttcaacacgttatgtactgagat 34486360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 31799388 - 31799316
Alignment:
Q  316 ttgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtactg 388  Q
    ||||||||| ||| ||||||| | ||| |||||| |||||||||||  |||||||| |||||||| |||||||    
T  31799388 ttgatagaacatgaacatacaaagttgagagaaaaattagaatgttcgggatactttagaacgttctgtactg 31799316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 31478184 - 31478125
Alignment:
Q  317 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaa 376  Q
    |||||||| || |||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  31478184 tgatagaacatacacatacagaattgagagaaagattaaaatgttttggatactttagaa 31478125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 16982 - 17052
Alignment:
Q  317 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtact 387  Q
    |||||||| |||||||||||||||   |||||||||||||||||| ||| ||||||||||| || ||||||    
T  16982 tgatagaacatgcacatacagaatcaagagaaagattagaatgttatgggtacttcagaacattctgtact 17052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 1000 - 1070
Alignment:
Q  317 tgatagaaaatgcacatacagaattgcgagaaagattagaatgttttggatacttcagaacgttatgtact 387  Q
    |||||||| |||||||||||||||   |||||||||||||||||| ||| ||||||||||| || ||||||    
T  1000 tgatagaacatgcacatacagaatcaagagaaagattagaatgttatgggtacttcagaacattctgtact 1070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 37749243 - 37749285
Alignment:
Q  317 tgatagaaaatgcacatacagaattgcgagaaagattagaatg 359  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||    
T  37749243 tgatagaacatgcacatacataattgagagaaagattagaatg 37749285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University