View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_17 (Length: 399)

Name: NF20078_low_17
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_17
NF20078_low_17
[»] chr7 (17 HSPs)
chr7 (14-384)||(2136408-2136771)
chr7 (25-253)||(2139651-2139874)
chr7 (14-236)||(2127034-2127253)
chr7 (14-236)||(2099774-2099991)
chr7 (25-236)||(2066958-2067164)
chr7 (33-313)||(2058694-2058975)
chr7 (15-183)||(2115133-2115301)
chr7 (14-236)||(2074047-2074273)
chr7 (14-183)||(2690736-2690905)
chr7 (14-157)||(2244587-2244730)
chr7 (31-151)||(1695639-1695756)
chr7 (33-183)||(2119851-2120001)
chr7 (186-236)||(2244534-2244584)
chr7 (323-384)||(2139933-2139994)
chr7 (252-302)||(2690619-2690668)
chr7 (276-313)||(2067185-2067222)
chr7 (344-384)||(2690355-2690395)
[»] chr1 (1 HSPs)
chr1 (33-94)||(24031851-24031912)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 2136408 - 2136771
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2136408 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaa 2136507  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatg 213  Q
    ||||||||||| |||||||| |||||||| |||  ||||||||||||||||||||||| ||||||||     ||||||||||||||||||||| |   |     
T  2136508 tgtgaaagagagaagtgaat-aaggaaaaaaaaaattacaaacaaaacatgagaccacacaaacacc-----attgtatttgaatattttgaaattggtc 2136601  T
Q  214 ttttggatgaaatgctagacacaaacatgttttgaatactaaaggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcattga 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2136602 ttttggatgaaatgctagacacaaacatgttttgaatactataggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcattga 2136701  T
Q  314 tc-nnnnnnnctttgttttctatttactagacatttgtctctattatttgactatgcaatttgctctgattt 384  Q
     |        ||||||||||||||| |||||||||||   |||||||||||||  |||||||||||||||||    
T  2136702 ccaaaaaaaactttgttttctattttctagacatttg--gctattatttgactcagcaatttgctctgattt 2136771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 2139651 - 2139874
Alignment:
Q  25 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagaga 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2139651 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagaga 2139750  T
Q  125 aaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatgttttggatgaa 224  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||     ||||||||||||||||||||||||  |||||||||||||    
T  2139751 aaagtgaataaaggaaaagaaattttacaaacaaaacttgagaccatacaaacacc-----attgtatttgaatattttgaactgtgtgttttggatgaa 2139845  T
Q  225 atgctagacacaaacatgttttgaatact 253  Q
    |||||||||||||||||||||||||||||    
T  2139846 atgctagacacaaacatgttttgaatact 2139874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 2127034 - 2127253
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2127034 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaa 2127133  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatg 213  Q
    |||||||| |||||||||||| ||||||||||||||||  |||||| || ||||||   ||||||||||| ||   ||||| ||||||||||||||||||    
T  2127134 tgtgaaagtgaaaagtgaatacaggaaaagaaattttagtaacaaagcaagagacctgacaaacaccattgta---tattttaatattttgaactgaatg 2127230  T
Q  214 ttttggatgaaatgctagacaca 236  Q
    |||||||||||||||||||||||    
T  2127231 ttttggatgaaatgctagacaca 2127253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 2099774 - 2099991
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2099774 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaa 2099873  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatg 213  Q
    |||||||| |||||||||||| ||||||||||||||||  ||||||||| ||||||   ||||||||     ||||||||| ||||||||||| ||||||    
T  2099874 tgtgaaagtgaaaagtgaatacaggaaaagaaattttagtaacaaaacaagagacctgacaaacacc-----attgtattttaatattttgaagtgaatg 2099968  T
Q  214 ttttggatgaaatgctagacaca 236  Q
    |||||||||||| ||||||||||    
T  2099969 ttttggatgaaaagctagacaca 2099991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 2066958 - 2067164
Alignment:
Q  25 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagaga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  2066958 ttgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaatgtgaaacaga 2067057  T
Q  125 aaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatgttttggatgaa 224  Q
    |||||||||  || |||||||||||||  ||||||||| ||||||   ||||||||     ||||||||| |||||||||||||||||||||||||||||    
T  2067058 aaagtgaatgcagtaaaagaaattttagtaacaaaacaagagacctgacaaacacc-----attgtattttaatattttgaactgaatgttttggatgaa 2067152  T
Q  225 atgctagacaca 236  Q
    ||||||||||||    
T  2067153 atgctagacaca 2067164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 33 - 313
Target Start/End: Original strand, 2058694 - 2058975
Alignment:
Q  33 aaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagagaaaagtgaa 132  Q
    |||||||||||||||||| || || |||||||||||||  | |||||||||||||| ||||  ||  ||| |||||||||||||||||| ||||||||||    
T  2058694 aaagccttccttaaattgtaagaaagcatggctttcatcatcatgacactttggcttaattaaagaaaaacatgtagtaaatgtgaaagtgaaaagtgaa 2058793  T
Q  133 taaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaactgaatgttttggatgaaatgctaga 232  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||  ||||||||| | |||||||||| ||||| |||||| |||||||||||||    
T  2058794 taaaggaaaagaaattttacaaacaaaacaagagaccagacaaacacca--atattgtatcttaatattttgagctgaaagttttgaatgaaatgctaga 2058891  T
Q  233 cacaaac---atgttttgaatactaaaggaatggactgcatataacaaatgaaaatgatttctagtgaacttgattatcattga 313  Q
    |||| ||    || ||   |||  ||||||||||| || ||||||||||| |||||| ||| ||||||||||||||||||||||    
T  2058892 cacatactaagtggttcttatagcaaaggaatggagtgtatataacaaataaaaatgttttgtagtgaacttgattatcattga 2058975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 2115133 - 2115301
Alignment:
Q  15 ggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||| ||| |||||||||||    
T  2115133 ggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacatgtagtaaat 2115232  T
Q  115 gtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccatt 183  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||   |||||||||||    
T  2115233 gtgaaagagaaaagtgaataaaggaaaagaaattttagtaacaaaacaagagacctgacaaacaccatt 2115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 2074047 - 2074273
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||| ||| ||||||||||    
T  2074047 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacatgtagtaaa 2074146  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccattatattgtatttgaatattttgaac------ 207  Q
    || ||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||   ||||||||     ||||||||| ||||||||||||          
T  2074147 tgcgaaagagaagagtgaataaagaaaaagaaattttactaacaaaacaagagacctgacaaacacc-----attgtattttaatattttgaactgaata 2074241  T
Q  208 ---tgaatgttttggatgaaatgctagacaca 236  Q
       |||||||||||||||||||||||||||||    
T  2074242 aagtgaatgttttggatgaaatgctagacaca 2074273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 2690905 - 2690736
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||    
T  2690905 aggctaggttattgataacaaagccttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaa 2690806  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccatt 183  Q
    |   | ||| || |||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||    
T  2690805 taaaagagaaaatagtgaataaaggaaaagaaattttactaacaaaacaagagaccagacaaacaccatt 2690736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 2244730 - 2244587
Alignment:
Q  14 aggctaagttattgatgacaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaa 113  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  2244730 aggctaagttattaatgacaaagccttgctttaattgcaacaaagcttggctttcatattgatgacactttggctgaatttgatgaaaacatgtagtaaa 2244631  T
Q  114 tgtgaaagagaaaagtgaataaaggaaaagaaattttacaaaca 157  Q
    |||||||||||||| |||||||||||| | ||||||||| ||||    
T  2244630 tgtgaaagagaaaattgaataaaggaatataaattttactaaca 2244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 1695756 - 1695639
Alignment:
Q  31 acaaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagagaaaagtg 130  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |  ||| ||| ||   ||||||||| || |||| |  |    
T  1695756 acaaagccttccttaaattgtaacaaggcatggctttcatcttgatgacactttggctgaactaaaggaaaacat---gtaaatgtggaaaagaacaaag 1695660  T
Q  131 aataaaggaaaagaaatttta 151  Q
    |||||||||||||||| ||||    
T  1695659 aataaaggaaaagaaacttta 1695639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 2119851 - 2120001
Alignment:
Q  33 aaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaag-atgtagtaaatgtgaaagagaaaagtga 131  Q
    |||| ||||||||||||||||||||| ||||||| ||| |  | |||||||||| ||||||  ||| |||  ||||||||| | |||||||||| | |||    
T  2119851 aaagtcttccttaaattgcaacaaggtatggctt-catctatacgacactttggttgaattaaaggaaaaacatgtagtaattatgaaagagaacaatga 2119949  T
Q  132 ataaaggaaaagaaattttacaaacaaaacatgagaccacgcaaacaccatt 183  Q
     |||||||||||||| |  || || |||||| ||||||||  ||||||||||    
T  2119950 gtaaaggaaaagaaactggactaaaaaaacaagagaccacagaaacaccatt 2120001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 2244584 - 2244534
Alignment:
Q  186 attgtatttgaatattttgaactgaatgttttggatgaaatgctagacaca 236  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  2244584 attgtattttaatattttgaactcaatgttttggatgaaatggtagacaca 2244534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 2139933 - 2139994
Alignment:
Q  323 ctttgttttctatttactagacatttgtctctattatttgactatgcaatttgctctgattt 384  Q
    ||||||||||||||| |||||||||||||||||||||| || |  ||||||| |||||||||    
T  2139933 ctttgttttctattttctagacatttgtctctattattggattcggcaatttcctctgattt 2139994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 2690668 - 2690619
Alignment:
Q  252 ctaaaggaatggactgcatataacaaatgaaaatgatttctagtgaacttg 302  Q
    ||||||||||| |||||||||||||||| ||||| |||| |||||||||||    
T  2690668 ctaaaggaatgcactgcatataacaaataaaaat-atttttagtgaacttg 2690619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 2067185 - 2067222
Alignment:
Q  276 aaatgaaaatgatttctagtgaacttgattatcattga 313  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  2067185 aaatgaaaatgttttctagtgaatttgattatcattga 2067222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 2690395 - 2690355
Alignment:
Q  344 catttgtctctattatttgactatgcaatttgctctgattt 384  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  2690395 catttgtctctattatttgactcagcagtttgctctgattt 2690355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 24031851 - 24031912
Alignment:
Q  33 aaagccttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaattt 94  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| || || ||||||||    
T  24031851 aaagtcttccttaacttgcaacagggcatggctttcatattcatgaccctatgactgaattt 24031912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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