View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_2 (Length: 539)
Name: NF20078_low_2
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 12 - 533
Target Start/End: Complemental strand, 6222473 - 6221952
Alignment:
| Q |
12 |
atgaaagtcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222473 |
atgaaagtcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaa |
6222374 |
T |
|
| Q |
112 |
agatctgccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattaattcaagtgttgatcccaatatctttgaaaagatagtttatcaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222373 |
agatctgccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattcattcaagtgttgatcccaatatctttgaaaagatagtttatcaag |
6222274 |
T |
|
| Q |
212 |
aaaccacaaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagttaaagaaggtgaagcttcaagcactgcaatgccaatatgagct |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6222273 |
aaaccacaaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagtcaaagaaggtgaagcttcaagcactgcaaagccaatatgagct |
6222174 |
T |
|
| Q |
312 |
gatcaagaaactagttcagaattcttttcaaaagcaatgactttaacaaagatcagaatacaatccaagcaactcattgcggttccatgaggttggaacc |
411 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222173 |
gatcaagaaactagttcagaattattttcaaaagcaatgactttaacaaatatcagaatacaatccaagcaactcattgcggttccatgaggttggaacc |
6222074 |
T |
|
| Q |
412 |
acaaaaactgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatcgtgtccccactcct |
511 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6222073 |
ccaaaaattgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatcgtgtccccactcct |
6221974 |
T |
|
| Q |
512 |
aagatatgaagaacgaccctct |
533 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6221973 |
aagatatgaagaacgaccctct |
6221952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 533
Target Start/End: Complemental strand, 6182298 - 6181777
Alignment:
| Q |
12 |
atgaaagtcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182298 |
atgaaagtcatattcagatttcaagatgtgtttgaaatcgtgaatgtgaatgatttcaagatgtgttctagatttgccagataatgctggtgatgcacaa |
6182199 |
T |
|
| Q |
112 |
agatctgccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattaattcaagtgttgatcccaatatctttgaaaagatagtttatcaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6182198 |
agatctgccaattgagagcaaaagaagacggatggaaaaggcttgttcctaattcattcaagtgttgatcccaatatctttgaaaagatagtttatcaag |
6182099 |
T |
|
| Q |
212 |
aaaccacaaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagttaaagaaggtgaagcttcaagcactgcaatgccaatatgagct |
311 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6182098 |
aaaccacaaaaggtgtttgggatactcttaataaagcataaggtggtcatgacaagtcaaagaaggtgaagcttcaagcactgcaaagccaatatgagct |
6181999 |
T |
|
| Q |
312 |
gatcaagaaactagttcagaattcttttcaaaagcaatgactttaacaaagatcagaatacaatccaagcaactcattgcggttccatgaggttggaacc |
411 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6181998 |
gatcaagaaactagttcagaattattttcaaaagcaatgactttaacaaatatcagaatacaatccaagcaactcattgcggttccatgaggttggaacc |
6181899 |
T |
|
| Q |
412 |
acaaaaactgccttcaaaggaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatcgtgtccccactcct |
511 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6181898 |
ccaaaaattgccttcaaatgaggggtagatcaaagagaccgatttgggaaacaaaattagcaaactccgtgaccgtgatctaaatcgtgtccccactcct |
6181799 |
T |
|
| Q |
512 |
aagatatgaagaacgaccctct |
533 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6181798 |
aagatatgaagaacgaccctct |
6181777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 44756041 - 44756088
Alignment:
| Q |
10 |
agatgaaagtcatattcagatttcaagatgtgtttgaaatcgtgaatg |
57 |
Q |
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|||||||||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
44756041 |
agatgaaagttatattcatattccaagatgtgtttgaaatcgtgaatg |
44756088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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