View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_20 (Length: 388)

Name: NF20078_low_20
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_20
NF20078_low_20
[»] chr7 (2 HSPs)
chr7 (19-172)||(47536136-47536289)
chr7 (19-172)||(23153109-23153263)
[»] chr4 (2 HSPs)
chr4 (19-168)||(44218315-44218464)
chr4 (19-196)||(21569726-21569903)
[»] chr5 (1 HSPs)
chr5 (19-196)||(42962683-42962860)
[»] chr2 (2 HSPs)
chr2 (19-196)||(371428-371606)
chr2 (227-354)||(370332-370448)
[»] chr3 (1 HSPs)
chr3 (138-172)||(27226017-27226051)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 47536136 - 47536289
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||    
T  47536136 gaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaaaacctcttcctc 47536235  T
Q  119 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47536236 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga 47536289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 23153263 - 23153109
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctc 118  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||  ||||||||||||| |||||| ||||||   |||||||||||||||    
T  23153263 gaatcagttaccataacacccaccaatccaaacttaaacgataaactcacgaaggtcaaactttgatacgaaaactgtaaaatgcgaaaacctcttcctc 23153164  T
Q  119 gatt-cttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga 172  Q
    |||| | ||||||| ||||   |||||||||||||||||||||||||||||||||    
T  23153163 gattccgtctttcaattcacaaggtatgtaaagttgtgtaatttataaaaggtga 23153109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 44218315 - 44218464
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||  |||||||||||||||    
T  44218315 gaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaaaacctcttcctc 44218414  T
Q  119 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44218415 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag 44218464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 21569726 - 21569903
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||  ||||| |||||||  |||||||||||||||    
T  21569726 gaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatactaaaacagtaaaacgcgaaaacctcttcctc 21569825  T
Q  119 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt 196  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  21569826 gattcgtctttcaattcacgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt 21569903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 42962860 - 42962683
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctc 118  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| |||||||||    
T  42962860 gaatcagttaagataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgtgaaaatctcttcctc 42962761  T
Q  119 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  42962760 gattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt 42962683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 371606 - 371428
Alignment:
Q  19 gaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaa-ccgtaaaacatgaaaacctcttcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||  ||||||||||||||    
T  371606 gaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaaccgtaaaacgcgaaaacctcttcct 371507  T
Q  118 cgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  371506 cgatttttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt 371428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 227 - 354
Target Start/End: Complemental strand, 370448 - 370332
Alignment:
Q  227 ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattcttccaaccctatcattagattgctattacta 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  370448 ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattc-----------tcattagattgctattacta 370360  T
Q  327 tacaaatctcaaagcttttacataattc 354  Q
    ||||||||||||||||||||||||||||    
T  370359 tacaaatctcaaagcttttacataattc 370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 27226051 - 27226017
Alignment:
Q  138 gtggtatgtaaagttgtgtaatttataaaaggtga 172  Q
    ||||||||||||||||||||||| |||||||||||    
T  27226051 gtggtatgtaaagttgtgtaattgataaaaggtga 27226017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University