View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_25 (Length: 355)
Name: NF20078_low_25
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 34588020 - 34588347
Alignment:
| Q |
10 |
ataatacttatgcatggacccaaacattgatgtctatatcacatgacaataactgaaacttctgcttatttatctttgcctttaatatatttgtccatat |
109 |
Q |
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| T |
34588020 |
ataatacttatgcatggacccaaacattgatgtctatatcacatgacaataactgaaacttctgcttatttatctttgcctttaatatatttgtccatat |
34588119 |
T |
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| Q |
110 |
tagaactttttcaacacaatgataagaagtggggcaggatttccttagtgcagcagcacctttagaacccatctcatgacaaacgaaagggaagagtttt |
209 |
Q |
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| T |
34588120 |
tagaactttttcaacacaatgataagaagtggggcaggatttccttagtgcagcagcacctttagaacccatctcatgacaaacgaaagggaggagtttt |
34588219 |
T |
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| Q |
210 |
tacacatccgaaaaaatacagctatttgtcttctgaatatacattttcaaacaatgttcaaaaatacacttccaaaggnnnnnnnnnnnnnaagtgtgag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34588220 |
tacacatccgaaaaaatacagctatttgtcttctgaatatacattttcaaacaatgttcaaaaatacacttccaaagg--tttttttttttaagtgtgag |
34588317 |
T |
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| Q |
310 |
ggtggccaaagttgttttctaacaaaaatg |
339 |
Q |
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| T |
34588318 |
ggtggccaaagttgttttcaaacaaaaatg |
34588347 |
T |
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