View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_low_27 (Length: 330)
Name: NF20078_low_27
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 314
Target Start/End: Original strand, 41041325 - 41041631
Alignment:
| Q |
2 |
agggacccaaatgtttcatcttttactttggtaagagttcctaagatagcaccggccaccaataaaaggagatagtcgattgcttgtaattgtgcttctc |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41041325 |
agggacccaaatgtttcatcatttactttggtaagagttcctaagatagcaccggccaccaataaaaggagatagtcgattgcttgtaattgtgcttctc |
41041424 |
T |
|
| Q |
102 |
gaagcagctgcttactaaccctgaaaagaattaactaatcaatctaacaggcttgttaactcnnnnnnnnnnnnnnnnnnnnntctaataatggattttg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41041425 |
gaagcagctgcttactaaccctgaaaagaattaactaatcaatctaacaggcttgttaactc------tctgtgtgtgtgtgttctaataatggattttg |
41041518 |
T |
|
| Q |
202 |
taccggccaacaaagtatctgtattgttgggctacattaggagtctttcggttagataagtcctttgttcttgagaatattgcttctatatgatctcctt |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41041519 |
taccggccaacgaagtatctgtattgttgggctacattaggagtctttcggttagataagtcctttgttcttgagaatattgcttctacatgatctcctt |
41041618 |
T |
|
| Q |
302 |
ggatcctaatatt |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41041619 |
ggatcctaatatt |
41041631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 28089995 - 28089876
Alignment:
| Q |
8 |
ccaaatgtttcatcttttactttggtaagagttcctaagatagcaccggccaccaataaaaggagatagtcgattgcttgtaattgtgcttctcgaagca |
107 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| | ||||||||| || || ||||||||||||||||| | ||||||| || ||||||||| ||| |
|
|
| T |
28089995 |
ccaaatgtttcatcgtttactttagtaagagttcccaggatagcaccagcaactaataaaaggagatagtcaactgcttgtgcttttgcttctcgcagct |
28089896 |
T |
|
| Q |
108 |
gctgcttactaaccctgaaa |
127 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
28089895 |
gctgcttaccaaccctgaaa |
28089876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University