View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_low_3 (Length: 510)
Name: NF20078_low_3
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 19412447 - 19412024
Alignment:
| Q |
15 |
aatatcaatggatgctta-aaaaagggacgtagggagtaataaatttagctaaagtccctttattatagcacacggccctattgtatagtccaacgattg |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19412447 |
aatatcaatggatgcttataaaaagggacgtagggagtaataaatttagctaaagtccctttattgtagcacacggccctattgtatagtccaacgattg |
19412348 |
T |
|
| Q |
114 |
catgaaaggtgcatgcactatttaaggattgttcgtaagtttctttttctcttttgattatgtgattaatgatgttttcaaaggatgtgtggtggattat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19412347 |
catgaaaggtgcatgcactatttaaggattgttcgtaagtttctttttctcttttgattatgtgattaatgatgttttcaaaggatgtgtggtggattat |
19412248 |
T |
|
| Q |
214 |
tagagtatttaaaatg---ttgtaacaaccaacaaccctag-----tatattcaaccaattgggtt------------aaagtatttaaagtattcacta |
293 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19412247 |
tagagtatttaaaatgttgttgtaacaaccaacaaccctagtctattatattcaaccaattgggttaaaggagaatgaaaagtatttaaagtattcacta |
19412148 |
T |
|
| Q |
294 |
tcgtctaacatttggaccctttcctcgttgtcaaataaaaatgatatttaaagaaaactgacagaatcatacaataataaattattgtaaagnnnnnnnt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
19412147 |
tcgtctaacatttggaccctttcctcgttgtcaaataaaaatgatatttaaagaaaactgacagaatcatacaataataa---attgtaaagaaaaaaat |
19412051 |
T |
|
| Q |
394 |
cattacataaagtgaaaaatgatttct |
420 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19412050 |
cattacataaagtgaaaaatgatttct |
19412024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 18161217 - 18161139
Alignment:
| Q |
393 |
tcattacataaagtgaaaaatgatttctgcagcaacagtaacagttatatgattcatattgtagaactgttaattattg |
471 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
18161217 |
tcattacaccaagtgaaaaatgatttctgcagcaacagtagcagttatatgattcatattatagaattgttaattattg |
18161139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 18161807 - 18161701
Alignment:
| Q |
132 |
tatttaaggattgttcgtaagtttctttttctcttttgattatgtgattaatgatgttt--------tcaaaggatgtgtggtggattattagagtattt |
223 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
18161807 |
tatttaaggatagttcgtaaatttccttttctcttttgattatgtgattaatgatgtttaattattgtcaaaggatgtgtggcgg---attagagtattt |
18161711 |
T |
|
| Q |
224 |
aaaatgttgt |
233 |
Q |
| |
|
|||||||||| |
|
|
| T |
18161710 |
aaaatgttgt |
18161701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University