View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_33 (Length: 291)
Name: NF20078_low_33
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 136107 - 135902
Alignment:
| Q |
77 |
tgtcaataacctctgctcaagagccacgaacattctttgagtaaataaaagtcttcccgactcaatgcctccacatatttcttttggctgaagctagttc |
176 |
Q |
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| T |
136107 |
tgtcaataacctctgctcaagagccacgaacattctttgagtaaataaaagtcttcccgactcaatgcctccacatatttcttatggctgaagctagtcc |
136008 |
T |
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| Q |
177 |
ttgtgtctgagatttacacattccatctacaacagtaatgatagaggaaattagaatcaaacacaccttttatgaaaatcataatataaggataatgaaa |
276 |
Q |
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| T |
136007 |
ttgtgtctgagatttgcacattccatctacaacagtaatgatagaggaaattagaatcaaacacaccttttatgaaaatcataatataaggataatgcaa |
135908 |
T |
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| Q |
277 |
tttgac |
282 |
Q |
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| T |
135907 |
tgtgac |
135902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 137088 - 137029
Alignment:
| Q |
12 |
atgaataaatggtaaccctcaatataaaaggaatgtgagattaaaacatgacttttagtg |
71 |
Q |
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| T |
137088 |
atgaataaatggtaaccctcaatataaaaggaatgtgagattaaaacatgacttttagtg |
137029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 157909 - 157844
Alignment:
| Q |
15 |
aataaatggtaaccctcaatataaaaggaatg-tgagattaaaacatgacttttagtgaatcatgt |
79 |
Q |
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| T |
157909 |
aataagtggtaaccctcaatataaatcgaatggtgagattaaaacatgactttaagtgaatcatgt |
157844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 273
Target Start/End: Original strand, 36084900 - 36085096
Alignment:
| Q |
81 |
aataacctctgctcaagagccacgaacattctttgagtaaataaaagtcttcccgactcaatgcctccacatatttcttttggctgaagctagttcttgt |
180 |
Q |
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| T |
36084900 |
aataacctctacttcagagtcacaaacattctttgaatggataaatgtcttccagagtcaatgcctcaacgtattgcttatggctgaaactacttcttgt |
36084999 |
T |
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| Q |
181 |
g-tctgagatttacacattccatctacaa--cagtaat-gatagaggaaattagaatcaaacacaccttttatgaaaatcataatataaggataatg |
273 |
Q |
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| T |
36085000 |
tctctgagattctcattttccatctataagacattaattgatagaggaagttacaatcgaagacatcttttatgaaaatcataatatagggataatg |
36085096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 34549080 - 34549170
Alignment:
| Q |
121 |
ataaaagtcttcccgactcaatgcctccacatatttcttttggctgaagctagttcttg-tgtctgagatttacacattccatctacaaca |
210 |
Q |
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| T |
34549080 |
ataaaagtcttccagattcaatgcctcaacatattgcttatggctgaagctagttcttgttctctgagattttcattttccatctataaca |
34549170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 34560606 - 34560716
Alignment:
| Q |
167 |
aagctagttcttgtgtctgagatttacacattccatctacaacagtaatgatagaggaaattagaatcaaacac----accttttatgaaaatcataata |
262 |
Q |
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| T |
34560606 |
aagctagttcttgtgtcttagaatctcattttctatctataagagtaatgataaaggaagttagaatcagagacgtacaccttttatgaaaatcataata |
34560705 |
T |
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| Q |
263 |
taaggataatg |
273 |
Q |
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|| |||||||| |
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| T |
34560706 |
tagggataatg |
34560716 |
T |
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