View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_34 (Length: 286)

Name: NF20078_low_34
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_34
NF20078_low_34
[»] chr5 (1 HSPs)
chr5 (1-286)||(33488442-33488722)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 33488722 - 33488442
Alignment:
Q  1 tgattatttttcagttgatgatgttgtgactaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattgaaggg 100  Q
    ||||||||||||| |   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33488722 tgattatttttcatt---tgatgttgtgaccaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattggaggg 33488626  T
Q  101 acgaatataaagaagttgaagctataatgaaggtgtggaatgagccttacaaacaaaccgagtttatactccatttcatagtttatggagtataaacgga 200  Q
    ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33488625 acga--ataaagaagttgaagctataatgaaggtgtggaatgaaccttacaaacaaaccgagtttatactccatttcatagtttatagagtataaacgga 33488528  T
Q  201 ccatttaacagagggactaaacagtcacattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33488527 ccatttaacagagggactaaacagtcacattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctc 33488442  T

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