View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_low_35 (Length: 278)
Name: NF20078_low_35
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 31363398 - 31363151
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31363398 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
31363299 |
T |
|
| Q |
114 |
acaaactaagcgccgagacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31363298 |
acaaactaagcgctgagacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
31363199 |
T |
|
| Q |
214 |
tgtcattgccaatacaacaaatgttgtattagctatgaacaaatgact |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31363198 |
tgtcattgccaatacaacaaatgttgtattagctatgaacaaatgact |
31363151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 31313648 - 31313401
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | |
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| T |
31313648 |
atgaataatttcaatgtaatcttcatgagttgcatcattagacatccaagaagaaaatatagaagatcgatttcaaatccgcattgaattttgttcctcg |
31313549 |
T |
|
| Q |
114 |
acaaactaagcgccgagacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| |
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| T |
31313548 |
acaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatccattaatttatcaaaaaaatatgaatacagtga |
31313449 |
T |
|
| Q |
214 |
tgtcattgccaatacaacaaatgttgtattagctatgaacaaatgact |
261 |
Q |
| |
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|| ||||||||||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
31313448 |
cgtgattgccaatacaacaaatgttgtatgagctacgaaccaatgact |
31313401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 31330326 - 31330098
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
31330326 |
atgaataatttcaatttaatcttcatgagttgcatcattagacatcctagaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcg |
31330227 |
T |
|
| Q |
114 |
acaaactaagcgccgagacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| || || |
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| T |
31330226 |
acaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtgttatatgcattaatttatcaaaaaaatatgaatatagcga |
31330127 |
T |
|
| Q |
214 |
tgtcattgccaatacaacaaatgttgtat |
242 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |
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|
| T |
31330126 |
cgtgattgccaatacaacatatgttgtat |
31330098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 31379108 - 31378880
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
31379108 |
atgaataatttcaatttaatcttcatgagttgcatcattagacatcctagaagaaaatatagaagatcgatttcaaatccgcattgagttttgttcctcg |
31379009 |
T |
|
| Q |
114 |
acaaactaagcgccgagacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
213 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||| || || |
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|
| T |
31379008 |
acaaactaagcaccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtgttatatgcattaacttatcgaaaaaatatgaatatagcga |
31378909 |
T |
|
| Q |
214 |
tgtcattgccaatacaacaaatgttgtat |
242 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |
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|
| T |
31378908 |
cgtgattgccaatacaacatatgttgtat |
31378880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 31279196 - 31279391
Alignment:
| Q |
30 |
taatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttgacaaactaagcgccga |
129 |
Q |
| |
|
||||||||||||| || | |||||||||||||||| || ||||||||||| | |||||||||||| |||||| | || ||||||||||| | | |
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|
| T |
31279196 |
taatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtt---tgccgcgacaaactaagtgacat |
31279292 |
T |
|
| Q |
130 |
gacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtgatgtcattgccaatac |
228 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||||| |||| ||| | || ||| ||||||||||||||| | ||||| || || ||||||| |||||| |
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|
| T |
31279293 |
gatagcaaaggaagcacatgaaatgaggctatatccatcaggtttcccattcatcaatttatcgaagaaaaatgaatatagcgaggtcattgtcaatac |
31279391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 31285113 - 31284958
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
|
|||||||| | |||| ||||||||||||| |||| |||| |||||| |||| || ||||||| ||||| ||||||||||||||||||| | || || |
|
|
| T |
31285113 |
atgaataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtt---tgccgtg |
31285017 |
T |
|
| Q |
114 |
acaaactaagcgccgagacagcaaaggatgcacatgaaatgagactatatgcatctggt |
172 |
Q |
| |
|
||||||| | | || || |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31285016 |
acaaactcattaacatgatagaaaaggaagcacatgaaatgaggctatatgcatctggt |
31284958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 31317738 - 31317599
Alignment:
| Q |
30 |
taatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttgacaaactaagcgccga |
129 |
Q |
| |
|
||||||||||||| || | ||||||||||| || | |||||||||||||| ||||||||||| || |||||| | ||||||||||||||| | | |
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|
| T |
31317738 |
taatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtt---tgccttgacaaactaagtgacat |
31317642 |
T |
|
| Q |
130 |
gacagcaaaggatgcacatgaaatgagactatatgcatctggt |
172 |
Q |
| |
|
| |||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
31317641 |
aatagcaaaggcagcacatgaaattaaactatatgcatctggt |
31317599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 31643591 - 31643730
Alignment:
| Q |
30 |
taatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttgacaaactaagcgccga |
129 |
Q |
| |
|
||||||||||||| || | |||||||||||||| | || ||||||||||||| |||||||||||| | |||| | | | ||||||||||| | | |
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|
| T |
31643591 |
taatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagtt---tgcgtcgacaaactaagtgacat |
31643687 |
T |
|
| Q |
130 |
gacagcaaaggatgcacatgaaatgagactatatgcatctggt |
172 |
Q |
| |
|
|| ||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
31643688 |
gatagcaaaggaagcacaagaaatgaggctatatgcatctggt |
31643730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 31381312 - 31381206
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
|
|||||||| | |||| ||||||||||||| |||| ||||| | ||| || | |||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
31381312 |
atgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtt---ttccttg |
31381216 |
T |
|
| Q |
114 |
acaaactaag |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
31381215 |
acaaactaag |
31381206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 31332527 - 31332421
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttttgttccttg |
113 |
Q |
| |
|
|||||||| | |||| ||||||||||||| |||| ||||| | ||| || | |||||||||||||||||||| |||||||| |||||| | ||||| |
|
|
| T |
31332527 |
atgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtt---tgccttg |
31332431 |
T |
|
| Q |
114 |
acaaactaag |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
31332430 |
acaaactaag |
31332421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 31288858 - 31288785
Alignment:
| Q |
14 |
atgaataatttcaatgtaatcttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttc |
87 |
Q |
| |
|
|||||||| | |||| ||||||||| ||| |||| ||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
31288858 |
atgaataactgcaatttaatcttcaagagttgcaccattagacatccaaggaaacaataaagaagatcaatttc |
31288785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 31288767 - 31288686
Alignment:
| Q |
130 |
gacagcaaaggatgcacatgaaatgagactatatgcatctggtgtattatgcattaatttatcgaagaaatacgaatacagtga |
213 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||| || || |||| || || ||||||||||||| | ||||||||||| |
|
|
| T |
31288767 |
gacagcgaaggaaacacatcaaatgagactatatgcatatg--gttttattcactactttatcgaagaaaaatgaatacagtga |
31288686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 25708825 - 25708755
Alignment:
| Q |
34 |
cttcatgagctgcatcattagacatccaagaaggaaataaagaagatcgatttcaaatccgcattgagttt |
104 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||||||||||| | ||||||||| || ||||||| |
|
|
| T |
25708825 |
cttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagttt |
25708755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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