View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_36 (Length: 267)
Name: NF20078_low_36
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3359184 - 3359435
Alignment:
| Q |
1 |
tagaaaacatgacaaaataagctaccactattaacccggaagatggtatgttcaacggctactgaattgcttaactaattcttcaaccaaatcagcttta |
100 |
Q |
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| T |
3359184 |
tagaaaacatgacaaaatgagctaccactattaaaccggaagatggtaagttcaacggctactgaattgcttaactaattcttcaaccaaatcagcttta |
3359283 |
T |
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| Q |
101 |
ttaagcttatagtaaccttttattttgtgcttctttgccatggacttcaacacgaccaatgtctctttcattaaggtttgtgatctctcactatggtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3359284 |
ttaagcttatagtaaccttttattttgtgcttctttgccatggacttcaacacgaccaatgtctctttcattaaggtttgtgatctctcattatggtaat |
3359383 |
T |
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| Q |
201 |
ccaccaacgaaagctccttgccattatattggcttgcattatccgtcggaac |
252 |
Q |
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| T |
3359384 |
ccaccaacgaaagctccttgccattatattggcttgcattatccgtcggaac |
3359435 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 22066510 - 22066599
Alignment:
| Q |
58 |
gctactgaattgcttaactaattcttcaaccaaatcagctttattaagcttatagtaaccttttattttgtgcttctttgccatggactt |
147 |
Q |
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| T |
22066510 |
gctactgaaatacttaactaattcttcaattaaacctgctttattaggcttatagtagccttttattttgcgcttctgtgccatggactt |
22066599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 22067508 - 22067416
Alignment:
| Q |
58 |
gctactgaattgcttaactaattcttcaaccaaatcagctttattaagcttatagtaaccttttattttgtgcttctttgccatggacttcaa |
150 |
Q |
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| T |
22067508 |
gctactgaaatacttaactaattcaacaactaaacctgctttattaagcttatattagccttttattttgagcttttgtgccatggacttcaa |
22067416 |
T |
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