View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_40 (Length: 248)
Name: NF20078_low_40
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 30099810 - 30100027
Alignment:
| Q |
17 |
aggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttgaaacctgatataatggcacctggatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099810 |
aggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttgaaacctgatataatggcacctggatca |
30099909 |
T |
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| Q |
117 |
agagttcttgcagcttatattcctaacaagccaacagctagaattggcacaaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgt |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099910 |
agagttcttgcagcttatattcctaacaaaccaacagctagaattggcacaaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgt |
30100009 |
T |
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| Q |
217 |
cttgtcctcatgtctctg |
234 |
Q |
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||||||||||||| |||| |
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| T |
30100010 |
cttgtcctcatgtttctg |
30100027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 30091105 - 30090889
Alignment:
| Q |
18 |
ggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttgaaacctgatataatggcacctggatcaa |
117 |
Q |
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|||| ||| ||||||||| |||||| ||||||||||||||||||| |||||| ||| ||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
30091105 |
ggaataaaaccggcaccaattgcagctcattactcatcaagaggtccatcacatggctttccttggattttgaagcctgacataatggcacctggatcaa |
30091006 |
T |
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| Q |
118 |
gagttcttgcagcttatattcctaacaagccaacagctagaattggcacaaatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatgtc |
217 |
Q |
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||||||| || |||| | ||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30091005 |
gagttctcgctgcttttgttccttataaaccaacagctagaattggtaccgatgtgttcttatcaagtgactacaatttcatgtcaggaacatccatggc |
30090906 |
T |
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| Q |
218 |
ttgtcctcatgtctctg |
234 |
Q |
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||||||||||| ||||| |
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| T |
30090905 |
ttgtcctcatgcctctg |
30090889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 35170831 - 35170737
Alignment:
| Q |
18 |
ggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggattttgaaacctgatataatggcacctgg |
112 |
Q |
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||||||||||| ||||||||||| || |||||| ||||||||||||||| | ||||||||| | || || || ||||| || ||||||||||| |
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| T |
35170831 |
ggaacaaagccagcaccagctgctgcttattacagttcaagaggtccttcaaaaagctatccaagaatcttaaagcctgacattatggcacctgg |
35170737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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