View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_42 (Length: 242)
Name: NF20078_low_42
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 7569442 - 7569235
Alignment:
| Q |
18 |
acatgtgactcatgtcatacttgattggtattaagccaccgtcttgattgatatctttgcgggctactttaaaaattaatccataa----gttaggatca |
113 |
Q |
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| T |
7569442 |
acatgtgactcatgtcacacttgattggtattaagccaccgtcttgattgatatctttgcgggctattttaaaaattaatccataagcttgataggatca |
7569343 |
T |
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| Q |
114 |
taataaacgataaaactttttattaaaagataatattgttccatttcaaattaattgaattcgaattcaaaacatttggttaagttaaaagagatattcc |
213 |
Q |
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| T |
7569342 |
taataaactataaaactcttcgttaaaagataatattgttccattccaa---aattgaattcgacttcagaacatttgattaagttaaaagagatacacc |
7569246 |
T |
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| Q |
214 |
accgtctcatt |
224 |
Q |
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||| ||||||| |
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| T |
7569245 |
accatctcatt |
7569235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 33561066 - 33561032
Alignment:
| Q |
169 |
tgaattcgaattcaaaacatttggttaagttaaaa |
203 |
Q |
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| T |
33561066 |
tgaattcgaattcaaaacatttggttaagataaaa |
33561032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 6300389 - 6300353
Alignment:
| Q |
172 |
attcgaattcaaaacatttggttaagttaaaagagat |
208 |
Q |
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| T |
6300389 |
attcgaactcaaaacatttggttaagctaaaagagat |
6300353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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