View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_low_44 (Length: 239)
Name: NF20078_low_44
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_44 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 17793326 - 17793112
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17793326 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
17793227 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793226 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
17793127 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17793126 |
ggagaacatatttaa |
17793112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 17797624 - 17797410
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797624 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
17797525 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797524 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
17797425 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17797424 |
ggagaacatatttaa |
17797410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 26400837 - 26400623
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26400837 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
26400738 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400737 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
26400638 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26400637 |
ggagaacatatttaa |
26400623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 26405135 - 26404921
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26405135 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
26405036 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405035 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
26404936 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26404935 |
ggagaacatatttaa |
26404921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 28914480 - 28914266
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28914480 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaaattcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
28914381 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914380 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
28914281 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28914280 |
ggagaacatatttaa |
28914266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 7033906 - 7033692
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7033906 |
aggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
7033807 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033806 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
7033707 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7033706 |
ggagaacatatttaa |
7033692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 7038206 - 7037992
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7038206 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
7038107 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038106 |
gcccactaatatcatgttcctataagttaggccacaatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
7038007 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7038006 |
ggagaacatatttaa |
7037992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 1541204 - 1540990
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1541204 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
1541105 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1541104 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactaaactagaaatta |
1541005 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1541004 |
ggagaacatatttaa |
1540990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 1545502 - 1545288
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1545502 |
aggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
1545403 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1545402 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
1545303 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1545302 |
ggagaacatatttaa |
1545288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 30505847 - 30506059
Alignment:
| Q |
9 |
aggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataact |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30505847 |
aggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacgtacaaatagaaaagtacagaatagaaaataact |
30505946 |
T |
|
| Q |
109 |
gcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaatta |
208 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||||| ||||||||| ||||||||||||||| || |
|
|
| T |
30505947 |
gcccattgatatcatgttcctataagttaggccacgacagaatacta-aaaaaaaatgcttgctgaaaactaggaggaaaagaaactgaactagaaacta |
30506045 |
T |
|
| Q |
209 |
ggagaacatatttaa |
223 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
30506046 |
gga-aacatatttaa |
30506059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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