View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20078_low_6 (Length: 474)

Name: NF20078_low_6
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20078_low_6
NF20078_low_6
[»] chr3 (8 HSPs)
chr3 (13-456)||(42250496-42250939)
chr3 (267-418)||(31779564-31779715)
chr3 (241-323)||(14427217-14427298)
chr3 (249-301)||(2120515-2120567)
chr3 (241-345)||(13291683-13291786)
chr3 (357-416)||(5798278-5798337)
chr3 (274-345)||(19905736-19905806)
chr3 (205-341)||(20648730-20648867)
[»] chr5 (9 HSPs)
chr5 (206-423)||(19903467-19903684)
chr5 (223-413)||(37390188-37390378)
chr5 (227-345)||(26335542-26335659)
chr5 (280-384)||(16791189-16791293)
chr5 (241-301)||(22186070-22186130)
chr5 (274-392)||(18325461-18325578)
chr5 (304-392)||(6037940-6038027)
chr5 (247-299)||(17241670-17241722)
chr5 (241-293)||(26013780-26013832)
[»] chr8 (7 HSPs)
chr8 (157-418)||(34062244-34062504)
chr8 (275-407)||(33925546-33925678)
chr8 (221-390)||(17872335-17872504)
chr8 (275-390)||(12012395-12012509)
chr8 (227-346)||(26576617-26576735)
chr8 (267-382)||(6589415-6589530)
chr8 (241-301)||(23584908-23584968)
[»] chr4 (11 HSPs)
chr4 (157-422)||(13977214-13977480)
chr4 (274-416)||(12236156-12236298)
chr4 (298-422)||(27940814-27940937)
chr4 (241-388)||(12191080-12191226)
chr4 (268-390)||(23865971-23866093)
chr4 (289-338)||(11779872-11779921)
chr4 (241-322)||(17743585-17743666)
chr4 (248-300)||(9883408-9883460)
chr4 (224-297)||(5984521-5984594)
chr4 (244-345)||(11545216-11545316)
chr4 (208-300)||(13929062-13929155)
[»] chr1 (10 HSPs)
chr1 (218-423)||(29076817-29077022)
chr1 (160-422)||(11105254-11105515)
chr1 (243-386)||(19960263-19960404)
chr1 (249-370)||(20619698-20619819)
chr1 (241-345)||(22666270-22666374)
chr1 (269-390)||(35896036-35896157)
chr1 (280-345)||(17103360-17103424)
chr1 (241-310)||(17316391-17316460)
chr1 (249-301)||(12669098-12669150)
chr1 (241-293)||(30805835-30805887)
[»] scaffold0217 (1 HSPs)
scaffold0217 (274-389)||(6909-7024)
[»] chr6 (3 HSPs)
chr6 (247-390)||(19691923-19692066)
chr6 (268-410)||(23601028-23601170)
chr6 (241-300)||(21747105-21747164)
[»] chr2 (4 HSPs)
chr2 (241-422)||(13112394-13112575)
chr2 (268-415)||(26704488-26704635)
chr2 (239-301)||(25563999-25564061)
chr2 (228-345)||(42256288-42256404)
[»] scaffold0010 (1 HSPs)
scaffold0010 (208-388)||(137004-137185)
[»] chr7 (6 HSPs)
chr7 (223-381)||(28981163-28981317)
chr7 (289-389)||(11609157-11609257)
chr7 (241-301)||(26822370-26822430)
chr7 (241-345)||(1783011-1783114)
chr7 (241-300)||(27707316-27707375)
chr7 (274-341)||(32957606-32957672)
[»] scaffold0514 (1 HSPs)
scaffold0514 (244-423)||(7158-7337)
[»] scaffold1190 (1 HSPs)
scaffold1190 (244-382)||(1225-1363)
[»] scaffold0329 (1 HSPs)
scaffold0329 (249-386)||(4286-4421)
[»] scaffold0650 (1 HSPs)
scaffold0650 (244-345)||(5897-5997)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Original strand, 42250496 - 42250939
Alignment:
Q  13 aatatctctacaaatgtttaaatggtgtcatttatttacacatggtgtaatttgatcgaatggatgtataaaagtgagaagctggagacttggaagcaac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  42250496 aatatctctacaaatgtttaaatggtgtcatttatttacacatggtgtaatttgattgtatggatgtataaaagtgagaagctggagacttggaagcaac 42250595  T
Q  113 tctgagggccataagactttgagggaatgaagctattaaagactctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtctt 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  42250596 tctgagggccataagactttgagggaatgaagctactaaagactctcagactttgaaggccacgtcagcatcaaaggtttttggctagtttggtcgtctt 42250695  T
Q  213 ccgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaaca 312  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  42250696 ctgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatggaatgaaaca 42250795  T
Q  313 gataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggact 412  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42250796 gataattccaattgaagcaaagaaatttcaaataatttttcaacgacattaaccaaatcaaaagacattccaacgtctctcatcgagattctcaaggact 42250895  T
Q  413 caaatttatgttctctctctaagatgcttttaacgtggtcttgg 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42250896 caaatttatgttctctctctaagatgcttttaacgtggtcttgg 42250939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 418
Target Start/End: Complemental strand, 31779715 - 31779564
Alignment:
Q  267 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 366  Q
    |||||| |||||||||||||||||||||||||||  |||| |||| |||||||||  |  | |||||| |||||||||  |  |||||  ||||||||||    
T  31779715 cgtgcagaaacaaacaaagaacttcaaagacaaataaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaacc 31779616  T
Q  367 aaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 418  Q
    ||||||  | ||||| |||||||||| ||| || |||| ||||| |||||||    
T  31779615 aaatcataaaacatttcaacgtctctgatcaagcttcttaaggagtcaaatt 31779564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 14427217 - 14427298
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaa 323  Q
    |||||||||||||||| |||| ||  |||| | |||||||||||||||||||| |||| ||  |||| |||||||||||||||    
T  14427217 tagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaacttcaaggacatagagaatg-aacagataattccaa 14427298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 2120515 - 2120567
Alignment:
Q  249 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||||||| | || |||| ||||||||||||||||||||||| |||||||    
T  2120515 tttgtcttcttttgaccccgtacaaaaacaaacaaagaacttcaatgacaaag 2120567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 13291683 - 13291786
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 340  Q
    ||||||||||||||||||||| ||  |||| | |||||||||||||||| ||| ||||||   |||| ||| ||||||| || ||  | |||||||||||    
T  13291683 tagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatg-aacggataatttcagtttcaacaaagaaattt 13291781  T
Q  341 caaat 345  Q
    |||||    
T  13291782 caaat 13291786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 5798278 - 5798337
Alignment:
Q  357 gacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaa 416  Q
    ||||||||||||||||||| ||||||||| |||| | ||  || ||||||||||||||||    
T  5798278 gacattaaccaaatcaagaaacattccaatgtctatgattaagcttctcaaggactcaaa 5798337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 19905806 - 19905736
Alignment:
Q  274 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 345  Q
    ||||||| ||||||||||||||||||||  |||| |||| ||| ||||| | | ||||||||||||||||||    
T  19905806 aaacaaataaagaacttcaaagacaaagagaatg-aacaaatagttccagtcgcagcaaagaaatttcaaat 19905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 20648867 - 20648730
Alignment:
Q  205 gtcgtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaagga 303  Q
    ||||||||| || | ||||||| |||||||| |  ||||||| ||||||| ||||||| ||  ||| |||| |||||||||||| |||||| |  |||      
T  20648867 gtcgtcttctgaagaaaggtcattatcagactcagagtagtataatttgtattcttctgaccacgtacaaatacaaacaaagaaattcaaatatcaagag 20648768  T
Q  304 aatgaaacagataattccaattgaagcaaagaaatttc 341  Q
    |||| |||| || |||| | || |||||||||||||||    
T  20648767 aatgtaacaaatcattctatttaaagcaaagaaatttc 20648730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 206 - 423
Target Start/End: Complemental strand, 19903684 - 19903467
Alignment:
Q  206 tcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaa 305  Q
    |||||||| ||||||||||||||||||||| ||  | | |||||||||  |||||| ||  |||||  ||| ||||||||||||| || |||||||| ||    
T  19903684 tcgtcttctgatggaaggtcactatcagactctgatcgcacaatttgttatcttctgaccacgtgctgaaataaacaaagaactttaaggacaaaggcaa 19903585  T
Q  306 tgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctc 405  Q
    ||||||| |||||| |||||||||||||| |||||||||| |  ||||| |||||||||||||||||| | ||||||| |||||||| ||| || ||||     
T  19903584 tgaaacatataatttcaattgaagcaaaggaatttcaaatgaactttcaatgacattaaccaaatcaataaacattcccacgtctctaatcaagcttcta 19903485  T
Q  406 aaggactcaaatttatgt 423  Q
    ||||||||||||||||||    
T  19903484 aaggactcaaatttatgt 19903467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 413
Target Start/End: Complemental strand, 37390378 - 37390188
Alignment:
Q  223 gtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 322  Q
    |||||||||||||  |  ||||||| ||| ||||||||| ||  | |||| |||||||||||||||||||| || ||  | ||||||||||||||||||     
T  37390378 gtcactatcagactttgatagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattcct 37390279  T
Q  323 attgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactc 413  Q
     || |||||||| ||||||||||   ||||||  || ||||||| |||| ||| |||||||||||||| | ||| || ||||||| |||||    
T  37390278 tttcaagcaaaggaatttcaaatgtcttttcaacgatattaaccgaatcgagaaacattccaacgtctatgatcaagcttctcaaagactc 37390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 26335542 - 26335659
Alignment:
Q  227 ctatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattg 326  Q
    ||||||||| ||  |||||||||||||| |||||| ||   ||||| | ||||| ||||||| |||| |||||| |||||| ||| |||||||||| |||    
T  26335542 ctatcagactctgatagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccagttg 26335640  T
Q  327 aagcaaagaaatttcaaat 345  Q
     ||||||| ||||||||||    
T  26335641 cagcaaaggaatttcaaat 26335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Complemental strand, 16791293 - 16791189
Alignment:
Q  280 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagaca 379  Q
    |||| ||||||||| |||||  | ||||||||| | |||| |  ||||||||||| ||||| |||||  ||||||  ||||||||||||||||||| |||    
T  16791293 acaatgaacttcaaggacaattggaatgaaacatacaatttcttttgaagcaaaggaattttaaatatcttttcaacgacattaaccaaatcaagaaaca 16791194  T
Q  380 ttcca 384  Q
    |||||    
T  16791193 ttcca 16791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 22186130 - 22186070
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||| | |||||||||||||    
T  22186130 tagtacaatttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaag 22186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 18325461 - 18325578
Alignment:
Q  274 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 373  Q
    |||||||||||||||||||  |||||  | ||||||||| ||||||||  ||||||||||| |||| ||||  |  |||||   |||||||||| | |||    
T  18325461 aaacaaacaaagaacttcagggacaattggaatgaaacacataattccttttgaagcaaaggaattccaaaagaactttcaacaacattaaccataccaa 18325560  T
Q  374 gagacattccaacgtctct 392  Q
    || ||||||||||||||||    
T  18325561 ga-acattccaacgtctct 18325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 6038027 - 6037940
Alignment:
Q  304 aatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctct 392  Q
    |||||||||||||||||||| |||||||||| |||||  ||||   |||||  | ||||||| ||||||||| | ||||||||||||||    
T  6038027 aatgaaacagataattccaaatgaagcaaaggaattt-gaatacgctttcaacgtcattaactaaatcaagaaatattccaacgtctct 6037940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 17241722 - 17241670
Alignment:
Q  247 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaa 299  Q
    ||||||||||||||| ||   |||||||||||||||||||| ||| |||||||    
T  17241722 aatttgtcttcttctaacaatgtgcaaaaacaaacaaagaaattcgaagacaa 17241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 26013832 - 26013780
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 293  Q
    ||||||||||||||||||||| ||   ||| | ||||||||||||||||||||    
T  26013832 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaa 26013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 418
Target Start/End: Original strand, 34062244 - 34062504
Alignment:
Q  157 ctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtctt 256  Q
    |||||||| | ||||||||||| |||||||| | ||||| || |||| || |||||  |||||||  ||||| ||| || ||| ||||||||||||||||    
T  34062244 ctcagactctaaaggccacgtcggcatcagaagcctttgactggttttgtagtcttatgatggaatatcactgtcaaactctaatagtacaatttgtctt 34062343  T
Q  257 cttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcatt 356  Q
    ||| | ||  |||||| |||||||||||||||||||||| ||   | ||||||||| |||||| |  |||||||||| ||||||||||| |  ||| |      
T  34062344 cttgtgaccacgtgcagaaacaaacaaagaacttcaaaggcagttggaatgaaacaaataatt-cttttgaagcaaataaatttcaaatgaccttttaaa 34062442  T
Q  357 gacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 418  Q
    ||||||||||||||||||| |||||| || |||| | |   || ||||||||||||||||||    
T  34062443 gacattaaccaaatcaagaaacattcaaatgtctttgacgaagtttctcaaggactcaaatt 34062504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 407
Target Start/End: Original strand, 33925546 - 33925678
Alignment:
Q  275 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 374  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||   |||||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  33925546 aacaaacaaagaacttcaaagacaaatgaaatgaaatggataattcattttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaag 33925645  T
Q  375 agacattccaacgtctctcatcgagattctcaa 407  Q
    | |||||| || |||| | ||| || |||||||    
T  33925646 aaacattctaatgtctatgatcaagcttctcaa 33925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 390
Target Start/End: Original strand, 17872335 - 17872504
Alignment:
Q  221 aggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattc 320  Q
    ||||| ||||||||| ||| |||||||||||||| |||||| ||| | || | || ||||||||||||||||| || ||  | ||||||||| |||||||    
T  17872335 aggtcgctatcagactctaatagtacaatttgtcctcttctaactacatgaagaaccaaacaaagaacttcaaggataattggaatgaaacatataattc 17872434  T
Q  321 caattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtct 390  Q
    |   ||||||||||||||||||||| |   |||| ||||||||||||||| |||| |||  |||||||||    
T  17872435 cgtatgaagcaaagaaatttcaaatgagagttcaatgacattaaccaaattaagaaacacaccaacgtct 17872504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 390
Target Start/End: Original strand, 12012395 - 12012509
Alignment:
Q  275 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 374  Q
    |||||||||| || ||||| ||| | || ||||||| ||||||||||||||||||||||| |||||||||| |  ||||| || ||||||||||||||||    
T  12012395 aacaaacaaaaaa-ttcaaggactaggggaatgaaagagataattccaattgaagcaaaggaatttcaaatgacctttcaatggcattaaccaaatcaag 12012493  T
Q  375 agacattccaacgtct 390  Q
      ||||||||||||||    
T  12012494 caacattccaacgtct 12012509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 26576735 - 26576617
Alignment:
Q  227 ctatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattg 326  Q
    ||||||||| | | ||||||||||| ||||||||| |   |||||| | |||||||||||||||||||||||||   |||| |||| ||||||||| |||    
T  26576735 ctatcagactccaatagtacaatttttcttcttctaatctcgtgcagatacaaacaaagaacttcaaagacaaaaagaatg-aacaaataattccagttg 26576637  T
Q  327 aagcaaagaaatttcaaata 346  Q
     | ||||| |||||||||||    
T  26576636 caacaaaggaatttcaaata 26576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 382
Target Start/End: Original strand, 6589415 - 6589530
Alignment:
Q  267 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 366  Q
    |||||| ||||||||||||||||||||  |||   | |||||| || |||||| || ||||||||||| |||||| ||| |  |||||  || |||| ||    
T  6589415 cgtgcagaaacaaacaaagaacttcaagaacagttggaatgaatcaaataatttcatttgaagcaaaggaatttcgaatgacctttcaacgatattatcc 6589514  T
Q  367 aaatcaagagacattc 382  Q
    ||||||||| ||||||    
T  6589515 aaatcaagaaacattc 6589530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 23584908 - 23584968
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||| |||||||| |||| ||  |||| | |||||||||||||||||||| |||||||    
T  23584908 tagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaag 23584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 422
Target Start/End: Original strand, 13977214 - 13977480
Alignment:
Q  157 ctcagactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagta-gtacaatttgtct 255  Q
    |||||||| |||||| |||||||  || ||| | | ||| ||||||| ||| ||||| || |||||||| ||||||||| ||  || ||||| |||| ||    
T  13977214 ctcagactctgaaggtcacgtcaatattagaagaccttgactagttttgtcttcttctgaaggaaggtcgctatcagactctgataagtacagtttgcct 13977313  T
Q  256 tcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcat 355  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||    ||| ||||| |||||||   ||||||||||| |||||||||| |  |||||     
T  13977314 tcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattagaattaaacaaataattctttttgaagcaaaggaatttcaaatgacctttcaa 13977413  T
Q  356 tgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 422  Q
     || | |||||| ||||||| |||||||||| |||   ||  || ||||||||||||||| ||||||    
T  13977414 cgataataaccatatcaagaaacattccaacatcttggattaagtttctcaaggactcaattttatg 13977480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 416
Target Start/End: Complemental strand, 12236298 - 12236156
Alignment:
Q  274 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 373  Q
    ||||| || ||||||||||| |||||  |||||||||| |||||||||  ||||||||||  ||||| ||||   ||||||  |||||||||||| ||||    
T  12236298 aaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttgaagcaaaagaattttaaatgtcttttcaacgacattaaccaactcaa 12236199  T
Q  374 gagacattccaacgtctctcatcgagattctcaaggactcaaa 416  Q
    || |||||  ||||||| | ||| || |||||| |||||||||    
T  12236198 gaaacatttgaacgtctatgatcaagcttctcagggactcaaa 12236156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 422
Target Start/End: Complemental strand, 27940937 - 27940814
Alignment:
Q  298 aaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcg 397  Q
    ||||| ||||||||| ||||||||||||||   |||  |||||||||  |  |||||  ||||||||||||||||||| ||||| ||| |||||| |||     
T  27940937 aaagggaatgaaacatataattccaattgagataaaagaatttcaaacgacctttcaacgacattaaccaaatcaagaaacatt-caatgtctctgatca 27940839  T
Q  398 agattctcaaggactcaaatttatg 422  Q
    || ||||||| ||||||||||||||    
T  27940838 agcttctcaatgactcaaatttatg 27940814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 388
Target Start/End: Complemental strand, 12191226 - 12191080
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 340  Q
    ||||||| ||||||||||| | ||   ||||| ||||| | ||||||||||||||||||  | | |||| |||||||||||  ||||||||||| |||||    
T  12191226 tagtacactttgtcttcttgtaaccatgtgcagaaacagaaaaagaacttcaaagacaattggattgaa-cagataattccttttgaagcaaaggaattt 12191128  T
Q  341 caaataatttttcattgacattaaccaaatcaagagacattccaacgt 388  Q
    |||||    || ||   |||||||||||||||||| | ||||||||||    
T  12191127 caaatgtcgttccaacaacattaaccaaatcaagaaatattccaacgt 12191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 23866093 - 23865971
Alignment:
Q  268 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 367  Q
    ||||| |||||||||||||||||||| |||||  | ||||||||  ||||||||  ||||||||||| ||||| |||| |  ||  |  |||||||| ||    
T  23866093 gtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaagcaaaggaattttaaatgacattcaaacgacattaatca 23865994  T
Q  368 aatcaagagacattccaacgtct 390  Q
     ||||||| |||||||| |||||    
T  23865993 tatcaagaaacattccaccgtct 23865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 11779921 - 11779872
Alignment:
Q  289 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaat 338  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||||    
T  11779921 ttcaatgacaaagggaatgaaacggataattccaattgaagcaaaaaaat 11779872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 17743666 - 17743585
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 322  Q
    |||||| |||||||||||| | ||  |||||| |||||||||||||| ||||| |||||||  |||| ||||||| ||||||    
T  17743666 tagtactatttgtcttcttatgaccacgtgcagaaacaaacaaagaagttcaatgacaaagagaatgtaacagatcattcca 17743585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 9883408 - 9883460
Alignment:
Q  248 atttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 300  Q
    |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||    
T  9883408 atttgtattcttctgactacgcgcaaaaacaaacaaagaacttcaatgacaaa 9883460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 5984521 - 5984594
Alignment:
Q  224 tcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagac 297  Q
    ||||||||||||   |||||||||||||||||| |||| ||  |||||| |||||||||  ||| |||||||||    
T  5984521 tcactatcagactagagtagtacaatttgtcttattctgaccacgtgcagaaacaaacagtgaaattcaaagac 5984594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 11545316 - 11545216
Alignment:
Q  244 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 343  Q
    |||||||||||||||||| ||   ||| | ||||||||||| |||||||| |||||||  ||| |||| |||||||||| ||  | ||||| ||||||||    
T  11545316 tacaatttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaat-aaacggataattccagtttcaacaaaggaatttcaa 11545218  T
Q  344 at 345  Q
    ||    
T  11545217 at 11545216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 13929062 - 13929155
Alignment:
Q  208 gtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 300  Q
    |||||| ||||||| |||||||||| || || | ||||| | ||||||||||||  ||  ||||||||||||||||| ||| ||||| ||||||    
T  13929062 gtcttctgatggaatgtcactatcatactctgaatagtagagtttgtcttcttcaaaccacgtgcaaaaacaaacaaggaaattcaaggacaaa 13929155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 423
Target Start/End: Original strand, 29076817 - 29077022
Alignment:
Q  218 ggaaggtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataa 317  Q
    ||||||||| |||||||| ||  ||||| ||||| ||||||||| |   |||||| |||||||||||  | ||||| |||||| ||||||||||  ||||    
T  29076817 ggaaggtcattatcagactctgatagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataa 29076916  T
Q  318 ttccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaat 417  Q
    || || ||||||||||  |||||||||| |  |||||    ||||||||||||||||| |||||||||||||| | ||| || ||||||| | |||||||    
T  29076917 tttcatttgaagcaaatgaatttcaaatgacatttcaacatcattaaccaaatcaagaaacattccaacgtctttgatcaagtttctcaaaggctcaaat 29077016  T
Q  418 ttatgt 423  Q
    ||||||    
T  29077017 ttatgt 29077022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 422
Target Start/End: Complemental strand, 11105515 - 11105254
Alignment:
Q  160 agactttgaaggccacgtcagcatcagaggtctttggctagtttggtcgtcttccgatggaaggtcactatcagacactagtagtacaatttgtcttctt 259  Q
    ||||| |||| |||| |||||||||||| |  | || || |||| ||||||||| ||||||||||| |||||| ||| |  ||||| | |||||||||||    
T  11105515 agactctgaaagccaagtcagcatcagaagcatctgactggttttgtcgtcttctgatggaaggtcgctatcatacattgatagtaaagtttgtcttctt 11105416  T
Q  260 ctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgac 359  Q
    || |   |||| | ||||||| |||  ||||||| || ||||| || |||||| |||||||||||||| | |||| | ||| |||| |  ||||| |||     
T  11105415 ctaatcacgtgtagaaacaaataaa--acttcaaggataaagggaacgaaacatataattccaattgatgaaaaggagtttaaaatgacctttcaatgat 11105318  T
Q  360 attaaccaaatcaagagacattccaacgtctctcatc-gagattctcaaggactcaaatttatg 422  Q
    |||||||| ||||||| |||||| ||||||||| | |  || |||||||||||| |||||||||    
T  11105317 attaaccagatcaagaaacattctaacgtctctgaccaaagcttctcaaggactaaaatttatg 11105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 19960263 - 19960404
Alignment:
Q  243 gtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttca 342  Q
    ||||| ||||||||||||| ||  |||||||||||| |||| |||||||||||||||  | |||||| || |||||||   ||||||||||| |||||||    
T  19960263 gtacactttgtcttcttctgaccacgtgcaaaaacatacaa-gaacttcaaagacaattggaatgaa-caaataattctttttgaagcaaaggaatttca 19960360  T
Q  343 aataatttttcattgacattaaccaaatcaagagacattccaac 386  Q
    |||   ||||||  |||||||||||||||| || ||||||||||    
T  19960361 aatgtcttttcaacgacattaaccaaatcatgaaacattccaac 19960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 20619819 - 20619698
Alignment:
Q  249 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 348  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||||||  ||||| ||||||||||||  | |||||  |||  ||||| |||| |     
T  20619819 tttgtcctcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattgaaataaaacagataatttaatttgaaaaaaatgaatttaaaatgac 20619720  T
Q  349 ttttcattgacattaaccaaat 370  Q
     ||||| |||||||||||||||    
T  20619719 ctttcaatgacattaaccaaat 20619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 22666374 - 22666270
Alignment:
Q  241 tagtacaattt-gtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatt 339  Q
    ||||||||||| |||||||||| ||  |||| | |||| ||||||||||||||| |||||||  |||| |||||||||||||| || |||| || |||||    
T  22666374 tagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatg-aacagataattccagtttaagcgaaaaaatt 22666276  T
Q  340 tcaaat 345  Q
    ||||||    
T  22666275 tcaaat 22666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 35896157 - 35896036
Alignment:
Q  269 tgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaa 368  Q
    |||| ||||||| ||||||||| || || ||  | |||||||  |||||||||  ||||||||||  ||||||||||   ||||||  ||||||||||||    
T  35896157 tgcagaaacaaataaagaactttaaggaaaatcggaatgaaatggataattccttttgaagcaaatgaatttcaaatttcttttcaaagacattaaccaa 35896058  T
Q  369 atcaagagacattccaacgtct 390  Q
    ||||| | ||||||||||||||    
T  35896057 atcaaaaaacattccaacgtct 35896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 17103360 - 17103424
Alignment:
Q  280 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 345  Q
    ||||||||||| || || ||||  |||||| |||||||||||| ||| ||||||||||||||||||    
T  17103360 acaaagaactttaaggataaagagaatgaa-cagataattccagttgcagcaaagaaatttcaaat 17103424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 17316391 - 17316460
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaa 310  Q
    ||||||||||||||||||||| ||   ||| | |||||||||| |||||| || ||||||| ||||||||    
T  17316391 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaaggacaaagaaaatgaaa 17316460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 12669098 - 12669150
Alignment:
Q  249 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||||||||| ||  | |||||||||| |||||||||||||| |||||||    
T  12669098 tttgtcttcttctgaccacatgcaaaaacagacaaagaacttcaaggacaaag 12669150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 30805835 - 30805887
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 293  Q
    |||||||||||||||||||||  |  |||| | ||||||||||||||||||||    
T  30805835 tagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaa 30805887  T

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Target: scaffold0217 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 389
Target Start/End: Original strand, 6909 - 7024
Alignment:
Q  274 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 373  Q
    ||||||||||||||| | || |||||  | ||||||||||||||||||  |||||||||||||||||||||||  ||||||  |||||||||||||||||    
T  6909 aaacaaacaaagaacattaaggacaattggaatgaaacagataattccttttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaa 7008  T
Q  374 gagacattccaacgtc 389  Q
    || ||||| |||||||    
T  7009 gaaacatttcaacgtc 7024  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 390
Target Start/End: Original strand, 19691923 - 19692066
Alignment:
Q  247 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaata 346  Q
    |||||||| |||||| |||  ||| | ||||||||||||| |||||| |||||  ||||||||||  ||||||  | ||||||||||| |||||| |||     
T  19691923 aatttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaattgaaatgaaacgaataatttaatttgaagcaaaggaatttcgaatg 19692022  T
Q  347 atttttcattgacattaaccaaatcaagagacattccaacgtct 390  Q
    |  |||||  ||||||||||||||||||| ||||||||| ||||    
T  19692023 agctttcaacgacattaaccaaatcaagaaacattccaatgtct 19692066  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 410
Target Start/End: Original strand, 23601028 - 23601170
Alignment:
Q  268 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 367  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||| || |||| |||||||||| || |||||  ||| | |  |||  |||||||| ||    
T  23601028 gtgcaaaaacaaacaaagaaattcaaggacaaagggaatgaaacaaatcattctaattgaagcagaggaattttgaatgactactcaacgacattaatca 23601127  T
Q  368 aatcaagagacattccaacgtctctcatcgagattctcaagga 410  Q
    |||||    | |||||||||||||| ||| || ||||||||||    
T  23601128 aatcagacaatattccaacgtctctaatcaagcttctcaagga 23601170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 21747164 - 21747105
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 300  Q
    |||| |||||| ||||||||| ||  |||||| | |||||||||||||||||||||||||    
T  21747164 tagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagacaaa 21747105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 422
Target Start/End: Original strand, 13112394 - 13112575
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 340  Q
    ||||||| ||||||||||||| ||  |||||| | ||||||||||||||| || |||||  ||||| |||| | |||||||  ||||||||||  || ||    
T  13112394 tagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacaattgaaataaaacgggtaattccttttgaagcaaatgaactt 13112493  T
Q  341 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 422  Q
      ||| |  |||||  ||||||||||||||||| | | |||||||||||||| ||  || ||||||||||||| || |||||    
T  13112494 tgaatgacatttcaacgacattaaccaaatcaaaaaatattccaacgtctctgattaagcttctcaaggactctaaattatg 13112575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 415
Target Start/End: Complemental strand, 26704635 - 26704488
Alignment:
Q  268 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 367  Q
    ||||||||| |||||||||| ||||| |||||||  |||| || | || |||| ||  |||||||||||||||||||| | | ||||  |||||||||||    
T  26704635 gtgcaaaaataaacaaagaaattcaaggacaaagagaatgcaatatatcattctaaaagaagcaaagaaatttcaaatgactattcaacgacattaacca 26704536  T
Q  368 aatcaagagacattccaacgtctctcatcgagattctcaaggactcaa 415  Q
    | |||||  | ||||||  |||||| ||| ||  |||||| |||||||    
T  26704535 agtcaagcaatattccattgtctctgatcaagcatctcaatgactcaa 26704488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 25563999 - 25564061
Alignment:
Q  239 agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||| ||||||||||||||| ||  |||| | |||||||||||||| |||||| ||||||    
T  25563999 agtagtataatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaag 25564061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 345
Target Start/End: Complemental strand, 42256404 - 42256288
Alignment:
Q  228 tatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattga 327  Q
    |||||||| ||  ||||||| ||||||||||| | ||  |||||| | ||||||||||||||||||  ||||| | |||| ||| | |||||| |||||     
T  42256404 tatcagactctgatagtacattttgtcttcttgtaaccacgtgcagatacaaacaaagaacttcaagtacaaaaggaatg-aacgggtaattctaattgc 42256306  T
Q  328 agcaaagaaatttcaaat 345  Q
    || |||| ||||||||||    
T  42256305 agtaaaggaatttcaaat 42256288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 388
Target Start/End: Complemental strand, 137185 - 137004
Alignment:
Q  208 gtcttccgatggaaggtcactatcagacact-agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaat 306  Q
    |||||| || |||||||| ||||||||| || | ||||||||||||||  ||||||||  |||||| | |||||||||||| ||||| |||||| |||||    
T  137185 gtcttctgaaggaaggtcgctatcagactctgaatagtacaatttgtcaccttctcaccacgtgcagatacaaacaaagaa-ttcaaggacaaaagaaat 137087  T
Q  307 gaaacagataattc-caattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 388  Q
    |||||| |  ||||  ||| |||||||||||||||| ||| | |  |||   ||||||||||||||| |  ||||||||||||    
T  137086 gaaacaaaccattcttaatagaagcaaagaaatttcgaattactactcaacaacattaaccaaatcatgctacattccaacgt 137004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 381
Target Start/End: Complemental strand, 28981317 - 28981163
Alignment:
Q  223 gtcactatcagacactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 322  Q
    |||||||||||||    |||||||| |||||||||||  ||||   |||| ||||||||||||||||||||||||||  | |||| ||| ||||||| |     
T  28981317 gtcactatcagacttaggtagtacactttgtcttcttaccact---tgcagaaacaaacaaagaacttcaaagacaattgtaatg-aacggataatttct 28981222  T
Q  323 attgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacatt 381  Q
     ||||||||| |  ||||||||  | ||||||  ||||||||||||||||||| |||||    
T  28981221 tttgaagcaaggggatttcaaacgacttttcaacgacattaaccaaatcaagaaacatt 28981163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 11609157 - 11609257
Alignment:
Q  289 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 388  Q
    ||||| |||||| | ||||||||  ||||||||||||||||||||| |||||| | ||  |||| |  ||||||||||| ||||||| | ||||||||||    
T  11609157 ttcaaggacaaaaggaatgaaacctataattccaattgaagcaaaggaatttcgagtatgtttttaacgacattaaccatatcaagaaatattccaacgt 11609256  T
Q  389 c 389  Q
    |    
T  11609257 c 11609257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 26822430 - 26822370
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 301  Q
    ||||||||||| |||||||||||||  ||| | |||||||||||||||||||| |||||||    
T  26822430 tagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaag 26822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 1783114 - 1783011
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 340  Q
    |||||||||||||| |||||| ||  |||| ||||| ||||||||||||||||  ||||||  |||| ||| |||||||||  ||| || |||| |||||    
T  1783114 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagtaaaggaattt 1783016  T
Q  341 caaat 345  Q
    |||||    
T  1783015 caaat 1783011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 27707316 - 27707375
Alignment:
Q  241 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 300  Q
    |||||||||||||| |||||| ||  | || | |||||||||||||||||||||||||||    
T  27707316 tagtacaatttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaa 27707375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 32957672 - 32957606
Alignment:
Q  274 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttc 341  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||||| ||  ||||||| ||||||    
T  32957672 aaacaaacaaagaacttcaaggacaaagataatg-aacagataattccagtttcagcaaaggaatttc 32957606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 423
Target Start/End: Complemental strand, 7337 - 7158
Alignment:
Q  244 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 343  Q
    ||||||||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  7337 tacaatttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 7238  T
Q  344 ataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgt 423  Q
    || |  |||||  || |||| ||||||||||| |||||| | | ||| | ||  || ||||||| | |||||||||||||    
T  7237 atgacctttcaacgatattatccaaatcaagaaacattcaagcatctatgattaagcttctcaaagtctcaaatttatgt 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 382
Target Start/End: Complemental strand, 1363 - 1225
Alignment:
Q  244 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 343  Q
    |||| |||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  1363 tacagtttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 1264  T
Q  344 ataatttttcattgacattaaccaaatcaagagacattc 382  Q
    || |  |||||  || |||| ||||||||||| ||||||    
T  1263 atgacctttcaacgatattatccaaatcaagaaacattc 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 4421 - 4286
Alignment:
Q  249 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 348  Q
    ||||||||||||| |   |||||| | |||||||| ||||||||| |||||| | |||||| | |||||||||   |  | ||||| |||||||||| |     
T  4421 tttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaa-cggataattccttgttcaacaaaggaatttcaaatgac 4324  T
Q  349 ttttcattgacattaaccaaatcaagagacattccaac 386  Q
    ||||||  ||||||||||||||||||| ||||||||||    
T  4323 ttttcaacgacattaaccaaatcaagaaacattccaac 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 5997 - 5897
Alignment:
Q  244 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 343  Q
    |||| ||||||||||||| ||  |||| ||||||||| |||||||||||  |||||||  |||| || ||||||||| | ||  ||||||| ||||||||    
T  5997 tacagtttgtcttcttctgacaacgtgtaaaaacaaagaaagaacttcagggacaaagagaatg-aatagataattcaagtttcagcaaaggaatttcaa 5899  T
Q  344 at 345  Q
    ||    
T  5898 at 5897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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