View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20078_low_8 (Length: 455)
Name: NF20078_low_8
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 25117104 - 25116679
Alignment:
| Q |
13 |
aatatatgagatagcaatttgaagtatatttgcttcgtttgttccaaaatgcatgtcatacaaatgctacctaaagataaagcgacgcaaaagaaatata |
112 |
Q |
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| T |
25117104 |
aatatatgagatagcaatttgaagtatatttgcttcgtttgttcaaatatgcatgtcatacaa-tgctacctaaagataaagcgacgcaaaaaaaatata |
25117006 |
T |
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| Q |
113 |
acataaaatcatattaacttacttttatttaagacatcagcaaataatccttctgcacaacaacacttgattagaaatgataataaagggagaaaaaatt |
212 |
Q |
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| T |
25117005 |
acataaaatcatattaacttacttttatttaagacatgaccaaataatccttctgcataacaacactttattagaaataacaataaagggagaaaaaatt |
25116906 |
T |
|
| Q |
213 |
cgactttgtattgatgtgaaaattggttgtaacattaccgttggattcacattgtgtcaaaaactcgttaaatccctccacaagatcggagtgttttccc |
312 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25116905 |
agactttatattgatgtgaaaattggttgtaacattaccgttggattcgcattgtgtcaaaaactcgttaaatccctccacaagatcggagtgttttccc |
25116806 |
T |
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| Q |
313 |
aacaaatcgcctacctgaatgcaacatgaattcttctccgtttcagta-ttttaacataatttttgtattaaagtttaatgttcaatgcaagccatattc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25116805 |
aacaaatcgcctacctgaatgcaacatgaattcttctccgttacagtatttttaacataatttttgtattaaagtttaatgttcaatgcaagccatattc |
25116706 |
T |
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| Q |
412 |
aattcaagagttataggatgtgacaga |
438 |
Q |
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| T |
25116705 |
aattcaagagttataggatgtgacaga |
25116679 |
T |
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