View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20078_low_9 (Length: 447)
Name: NF20078_low_9
Description: NF20078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20078_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 31671465 - 31671884
Alignment:
| Q |
12 |
aattcttcaacacaaacttattaaaatatatcagagttaatttgtaggagcagattaatatcactctgaatatagataatataataacaccatcacttat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31671465 |
aattcttcaacacaaacttattaaaatatatcagagttaatttgtaggagcaaattaatatcactctgaatatagataatataataacaccatcacttat |
31671564 |
T |
|
| Q |
112 |
tattcatcattgttaggtacaaatcacaagttcaaagctacaatacatcagatatatattgtacacacaatatatatagtgatcaagcttttttatctta |
211 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31671565 |
tattcatcattgttaagtacaaatcacaggttcaaagctacaatacatcagatatatattgtacacacaatatatatagtgatcaagctttttaatctta |
31671664 |
T |
|
| Q |
212 |
ataacttaattatccacagataattatactaacttacaaacttaaaaggacataatacctcatggatggtcatatatagaaaatgatggttttagtttac |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31671665 |
ataacttaattatccaaagataattatactaacttacaaacttaaaaggacataatacctcatggatggtcatatatagaaaatgatggttttagtttac |
31671764 |
T |
|
| Q |
312 |
ttgaacttaacaatttgggatgacaacattgcaagcactagcaacccttttagaaccaggagagttaacatattgcttcaaattagggtttttgatgtat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31671765 |
ttgaacttaacaatttgggatgacaacattgcaagcactagcaacccttttagaaccaggagagttaacatattgcctcaaattagggtttttgatgtat |
31671864 |
T |
|
| Q |
412 |
ccacataagcatggcctttg |
431 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31671865 |
ccacataagcatggcctttg |
31671884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 31658832 - 31658992
Alignment:
| Q |
48 |
ttaatttgtaggagcagattaatatcactctgaatatagataa-tataataacaccatcactt----attattcatcattgttaggtacaaatcacaagt |
142 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||| ||||| ||||||||| |
|
|
| T |
31658832 |
ttaatttgttcgagaaaattaatatcactctgaatatagataaatataataacaccatcactttattattatttattattgta--gtacatatcacaagt |
31658929 |
T |
|
| Q |
143 |
tcaaagctacaatacatcagatatatattgtacacacaatatatatagtgatcaagcttttttat |
207 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31658930 |
tcaaagctacac--catcacatatatatcgtacacacaatatatatagtgatcaagcttttttat |
31658992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 31659015 - 31659108
Alignment:
| Q |
296 |
gatggttttagtttacttgaacttaaca---atttgggatgacaacattgcaagcactagcaacccttttagaaccaggagagttaacatattg |
386 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||| | ||| | |||||||||||||||||| |
|
|
| T |
31659015 |
gatggttttagtttatttgaacttaacaattattcgggatgacaacattacaagcactagcaacctctctagctctaggagagttaacatattg |
31659108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University