View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_high_13 (Length: 327)
Name: NF20079_high_13
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 2553816 - 2554124
Alignment:
| Q |
1 |
gaatattttctttcaaagggtaaggagaaatattgatatgcacacggtttcgataaacatctcatgcaatgcatatgatattgttctgcnnnnnnn-gtc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2553816 |
gaatattttctttcaaagggtaaggagaaatattgatatgcacacggttttgataaacatctcatgcaatgcatatgatattgttctgcaaaaaaaagtc |
2553915 |
T |
|
| Q |
100 |
tgatcactagtcaagtggtataataattttaagtgcaggttgtcgcaagcaaattactgcaaacagaaagaaaactgtgatgctgatgatgacgacgacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2553916 |
tgatcactagtcaagtggtataataattttaagtgcaggttgtcgcaagcaaattactgcaaacagaaagaaaactgtgatgctgatgaggacgacgatg |
2554015 |
T |
|
| Q |
200 |
atggtgacatttcttctgatgaggaagccttggagaatgcagagaccaagcaccacattgaagaagtgcatgttagaaagaacaagatcactggctttgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2554016 |
atggtgacatttcttctgatgaggaagccttggagaatgcagagaccaagcaccacattgaagaagtgcatgttagaaagaacaagatcactggctttgt |
2554115 |
T |
|
| Q |
300 |
gggagagct |
308 |
Q |
| |
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||||||||| |
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| T |
2554116 |
gggagagct |
2554124 |
T |
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