View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_high_17 (Length: 282)
Name: NF20079_high_17
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 11299886 - 11300131
Alignment:
| Q |
28 |
tgccaataatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacccacgcaagtacgttgtttaatcacatagaaaa |
127 |
Q |
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| T |
11299886 |
tgccaataatattttcacatgtaagatattacaaaaatgtttcatgtacatccaattttccctacacctacgcaagtacgttgtttaatcacattgaaaa |
11299985 |
T |
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| Q |
128 |
ttatggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaatt-aaaacatatttgaatgtgacgccgg |
226 |
Q |
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| T |
11299986 |
ttgtggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaaaacatctatccaactaaattaaaaacatatttgaatgtgacgccgg |
11300085 |
T |
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| Q |
227 |
tgtagnnnnnnntatgagcctgaatacactatagccccaattcttc |
272 |
Q |
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| T |
11300086 |
tgtaggaaaaaatatgagcctgaatacactatagccccaattcttc |
11300131 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 19297003 - 19297081
Alignment:
| Q |
125 |
aaattatggttaat-atgtaattgaattaatcacaattttgaccgtgaatttaattaaaatatctatccaactaaattaa |
203 |
Q |
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| T |
19297003 |
aaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaatt-aaccatctattcaactaaattaa |
19297081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 3750634 - 3750691
Alignment:
| Q |
125 |
aaattatggttaata-tgtaattgaattaatcacaattttgaccgtgaatttaattaa |
181 |
Q |
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| T |
3750634 |
aaattgtggttaataatgtaattgaattaaccacaactttgaccttgaattgaattaa |
3750691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 31120298 - 31120354
Alignment:
| Q |
125 |
aaattatggttaatatgtaattgaattaatcacaattttgaccgtgaatttaattaa |
181 |
Q |
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| T |
31120298 |
aaattgtgattaatatataattgaatttatcacaattttaacagtgaattgaattaa |
31120354 |
T |
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