View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_high_18 (Length: 282)
Name: NF20079_high_18
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 27780152 - 27779917
Alignment:
| Q |
23 |
ggaaagggaataaagggttaaagatgaataaaatattttggggaaaagaatatgtactaacatatggggtgaagaatattgggtcaacnnnnnnnnattg |
122 |
Q |
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| T |
27780152 |
ggaaagggaataaagggttaaagatgaataatatattttggggaaaagaatatgtactaacatatggggtggagaatatagggtgaactttttgt-attg |
27780054 |
T |
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| Q |
123 |
tatacaataaatcggagttcttaggattaattaataattagtggttgctttaagaataatttacttaatgagcaagaaatgtcatagaaaagggaatgta |
222 |
Q |
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| T |
27780053 |
-atacaatatatctgagttcttaggattaattaataattagtggttgtttaaagaataatttacttaataagcaagaaatgtcatagaaaagggaatgt- |
27779956 |
T |
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| Q |
223 |
ggatcttgtaagttgtgaaagttaaacaattgcaatcgaaa |
263 |
Q |
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| T |
27779955 |
--atcttgtaagttgtgaaagtaaaacaattgcaatcgaaa |
27779917 |
T |
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