View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_high_9 (Length: 356)
Name: NF20079_high_9
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 163 - 344
Target Start/End: Complemental strand, 51574713 - 51574532
Alignment:
| Q |
163 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaataattgttaaaactataaattgaactc |
262 |
Q |
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| T |
51574713 |
aactctttggttcctaagggaaggctccctagtaatatggaatccgatcgagacgtaagtaaagtctgatcaagaattgttaaaactataaattgaactt |
51574614 |
T |
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| Q |
263 |
agatttctcttaaatgtttcatccttagttttttcttttaattatcccattttgcatttgattggctacatatactcgtgtc |
344 |
Q |
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| T |
51574613 |
agatttctgttgaaagtttcatccttagttttttctcttaattatcccattttgcatttgattggctacatatactcttgtc |
51574532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 51574877 - 51574737
Alignment:
| Q |
1 |
caccttcctaggtaagaaactatctcactcctccgtccttaaaattttgccttctgtcgttgtaataattattgccatggttattctatatttgctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
51574877 |
caccttcctaggtaagaaactatctcactcctccgtccataaaattttgccttctgtcgtagtaataattattgccatggttcttctatatttgctatgg |
51574778 |
T |
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| Q |
101 |
cttaatatgtatctttgaccatcaatgtaattaaaatgtta |
141 |
Q |
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| T |
51574777 |
cttaatatgtatctttgaccatgaatgtaattaaaatgtta |
51574737 |
T |
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