View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_1 (Length: 748)
Name: NF20079_low_1
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 50680520 - 50680181
Alignment:
| Q |
18 |
aaatccacctcaagatgtattgatcaaaaccgttaggaataataaatgatttgaagttttggaccacataaataaattgaatgccttttaaccccatcaa |
117 |
Q |
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| T |
50680520 |
aaattcacctcaagatgtattgatcaaaaccgttaggaataataaatgatttgaagttttggaccacataaataaattgaatgccttttaaccccatcaa |
50680421 |
T |
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| Q |
118 |
ataacgatggtcctgaatctttgtgattattaaactgattaattagcttccatgtgcacattgtgtacgtaccttataaattgccttgtgaagcttgtgg |
217 |
Q |
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| T |
50680420 |
ataacgatggtcctgaatctttgtgattattaaactgatta----gcttccatgtgcacattgtgtacgtaccttataaattgccttgtgaagcttgtgg |
50680325 |
T |
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| Q |
218 |
atgttatataacgtggaagggaccaccttagttgtataagttttcctaagtgcaacactttagggtgcaatttttgcttaaatcgccaatctaaaacagc |
317 |
Q |
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| T |
50680324 |
atgttatataacgtggaagggaccaccttagttgtataagttttcctaagtgcaacactttagggtgcaatttttgcttaaatcgccaatctaaaacagc |
50680225 |
T |
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| Q |
318 |
tgcttttattcaaactagctaagctgcttttattcaaattagct |
361 |
Q |
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| T |
50680224 |
tgcttttattcaaactagctaagctgcttttattcaaattagct |
50680181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 549 - 735
Target Start/End: Complemental strand, 50679969 - 50679783
Alignment:
| Q |
549 |
aattcgtcctctaaagtataagaatgttcaatccttttctccttgatcaaccattgtacaaccattaatatcaggggaagttgcaaggcaagcggcacaa |
648 |
Q |
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| T |
50679969 |
aattcgtcctctaaagtataagaatgttcaatccttttctccttgatcaaccattgtacaaccattaatatcaggggaagttgcaaggcaagcggcacaa |
50679870 |
T |
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| Q |
649 |
caatggaagacaatataaagtgaaagtggagaccttaccagaaaataatcagtgctcaaatagtactatctgccctatttaagaata |
735 |
Q |
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| T |
50679869 |
caatggaagacaatataaagtgaaagtggagaccttaccagaaaataatcagtgctcaaataatactatctgccctatttaagaata |
50679783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 50680183 - 50680071
Alignment:
| Q |
389 |
gctttgattgaaacctgaattagatttccaacacatacacacgtgacacgtccatcacataagaccatgatatcaatctaatctaatctaattgaaaatt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50680183 |
gctttgattgaaacctgaattagatttccaacacatacacacgtgacacgtccatcacataagaccatgatatctatctaatctaatctaattgaaaatt |
50680084 |
T |
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| Q |
489 |
tcataagtgaaag |
501 |
Q |
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| T |
50680083 |
tcataagtgaaag |
50680071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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