View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_10 (Length: 353)
Name: NF20079_low_10
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 37042720 - 37043043
Alignment:
| Q |
9 |
gaagaaaattacagatttaaatttgcgtttcaatatattgaatgtctagtttatcatatgaattatttcgggacaatattatattaaaaaagtaagatgt |
108 |
Q |
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| T |
37042720 |
gaagaaaattacagatttaaatttgtgtttcaatatattgaatgtctagtttatcatatgaattatttcgggacaatattatattaaaaaagtaaaatgt |
37042819 |
T |
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| Q |
109 |
tacttatttttgaagaaaaataaaatcttgttaaaatcacacttagaaatattcttaagatctgtgaggtaatctataaccttacccttatctattaagt |
208 |
Q |
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| T |
37042820 |
tacttatttttgaagaaaaataaaatcttgttaaaataacacttagaaatattcttaagatctgtgaggtaatcta------tacccttatctattaagt |
37042913 |
T |
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| Q |
209 |
tcttggtca----gtgtgtgagcattttttccttcaaaattttctttggtccatgtggagtggcatatttatattcaactttatatagatttggctttac |
304 |
Q |
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||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37042914 |
tcttggtgagtgtgtgtgtgagctttttttccctcaaaattttctttggtccatgtggagtggcatatttctattcaactttatatagatttggctttac |
37043013 |
T |
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| Q |
305 |
taatttgaaaacgataggttaaatcttact |
334 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37043014 |
taatttgaaaacgataggttaaatcttact |
37043043 |
T |
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